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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1502 1503 1504 1505 1506 1507 1508 1509 1510 ... 1720 1721 » 75251-75300 / 86044 show all
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3069	99.2443	99.3695	89.2982	788	6	788	5	5	100.0000
ltrigg-rtg1	SNP	*	map_l100_m2_e1	*	99.3071	98.8520	99.7664	59.3097	73879	858	73876	173	38	21.9653
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3072	99.0383	99.5775	51.0793	16271	158	35588	151	137	90.7285
hfeng-pmm3	SNP	tv	map_l100_m0_e0	het	99.3072	99.2523	99.3623	70.7621	7168	54	7167	46	4	8.6957
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3072	99.1321	99.4829	51.2667	3655	32	3655	19	16	84.2105
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3078	99.3917	99.2240	48.4791	2941	18	2941	23	2	8.6957
jpowers-varprowl	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.3080	99.3771	99.2391	58.1058	17070	107	17085	131	66	50.3817
dgrover-gatk	SNP	tv	map_l100_m2_e1	het	99.3081	99.5294	99.0878	72.9526	15863	75	15859	146	24	16.4384
astatham-gatk	INDEL	*	map_l100_m1_e0	homalt	99.3081	99.4295	99.1870	83.8625	1220	7	1220	10	6	60.0000
hfeng-pmm1	SNP	tv	map_l125_m2_e0	het	99.3085	99.0328	99.5858	71.6339	10341	101	10339	43	11	25.5814
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3092	99.1720	99.4467	63.8078	2156	18	2157	12	5	41.6667
egarrison-hhga	SNP	tv	map_l100_m2_e0	het	99.3093	98.8845	99.7379	65.3478	15601	176	15601	41	13	31.7073
rpoplin-dv42	SNP	ti	map_l125_m2_e1	*	99.3100	99.1069	99.5138	70.8133	30296	273	30292	148	102	68.9189
ckim-dragen	SNP	ti	map_l150_m0_e0	homalt	99.3100	99.0221	99.5996	68.7592	2734	27	2736	11	10	90.9091
gduggal-bwafb	SNP	ti	map_siren	*	99.3101	99.3981	99.2222	57.2359	99751	604	99755	782	145	18.5422
eyeh-varpipe	SNP	tv	map_l150_m2_e1	hetalt	99.3103	100.0000	98.6301	77.1875	20	0	72	1	0	0.0000
hfeng-pmm3	INDEL	D6_15	map_l150_m1_e0	*	99.3103	98.6301	100.0000	90.9434	72	1	72	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3103	98.6301	100.0000	78.6632	648	9	648	0	0
hfeng-pmm2	INDEL	D6_15	map_l150_m1_e0	*	99.3103	98.6301	100.0000	92.0792	72	1	72	0	0
jli-custom	INDEL	D6_15	map_l150_m1_e0	*	99.3103	98.6301	100.0000	91.1001	72	1	72	0	0
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3103	100.0000	98.6301	65.2381	216	0	216	3	3	100.0000
astatham-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3103	100.0000	98.6301	68.1223	216	0	216	3	3	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3103	98.6301	100.0000	25.8312	576	8	580	0	0
ltrigg-rtg2	INDEL	D6_15	map_l150_m1_e0	*	99.3103	98.6301	100.0000	87.8840	72	1	71	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3103	100.0000	98.6301	67.8414	216	0	216	3	3	100.0000
ndellapenna-hhga	SNP	ti	map_l250_m2_e0	homalt	99.3103	98.7993	99.8267	86.8804	1728	21	1728	3	3	100.0000
rpoplin-dv42	INDEL	D6_15	map_l150_m1_e0	*	99.3103	98.6301	100.0000	92.1824	72	1	72	0	0
ckim-vqsr	INDEL	*	func_cds	het	99.3103	100.0000	98.6301	63.5607	214	0	216	3	0	0.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3106	99.8446	98.7824	50.8940	8353	13	8356	103	101	98.0583
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3107	99.0992	99.5231	80.1218	6821	62	6887	33	15	45.4545
qzeng-custom	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3109	99.1991	99.4230	66.8389	1734	14	1723	10	7	70.0000
hfeng-pmm1	SNP	tv	map_l125_m2_e1	het	99.3110	99.0335	99.5902	71.6922	10451	102	10449	43	11	25.5814
gduggal-bwavard	SNP	*	func_cds	*	99.3111	98.9862	99.6380	30.1556	17966	184	17892	65	23	35.3846
jli-custom	SNP	tv	map_l250_m2_e1	homalt	99.3111	99.0486	99.5749	85.5298	937	9	937	4	4	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3112	98.7493	99.8796	50.2546	6632	84	6634	8	2	25.0000
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3113	99.2548	99.3680	72.5172	3596	27	3616	23	5	21.7391
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3114	99.8797	98.7495	59.4453	2491	3	2527	32	0	0.0000
egarrison-hhga	SNP	ti	HG002compoundhet	homalt	99.3116	99.4861	99.1378	31.0451	7356	38	7359	64	54	84.3750
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3118	98.6330	100.0000	85.2817	938	13	938	0	0
hfeng-pmm2	INDEL	*	*	*	99.3119	99.0152	99.6103	57.8578	341149	3393	341015	1334	1012	75.8621
jli-custom	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	85.1837	361	3	361	2	2	100.0000
egarrison-hhga	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	86.4552	361	3	361	2	2	100.0000
ckim-vqsr	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	86.4855	361	3	361	2	2	100.0000
ckim-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	86.4855	361	3	361	2	2	100.0000
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3123	98.9185	99.7093	62.6392	1372	15	1372	4	0	0.0000
bgallagher-sentieon	SNP	ti	map_l250_m1_e0	homalt	99.3125	98.8799	99.7489	85.0633	1589	18	1589	4	3	75.0000
egarrison-hhga	SNP	tv	map_l100_m1_e0	het	99.3126	98.8649	99.7644	63.7472	15242	175	15242	36	13	36.1111
ltrigg-rtg1	INDEL	I1_5	*	het	99.3128	98.9158	99.7130	54.8506	78184	857	77471	223	56	25.1121
egarrison-hhga	SNP	tv	map_l100_m2_e1	het	99.3132	98.8894	99.7405	65.3943	15761	177	15761	41	13	31.7073
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3133	98.8433	99.7877	85.1420	940	11	940	2	2	100.0000

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