PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1501 1502 1503 1504 1505 1506 1507 1508 1509 ... 1720 1721 » 75201-75250 / 86044 show all
hfeng-pmm1	SNP	tv	tech_badpromoters	*	99.3007	98.6111	100.0000	49.6454	71	1	71	0	0
hfeng-pmm3	SNP	tv	tech_badpromoters	*	99.3007	98.6111	100.0000	48.9209	71	1	71	0	0
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.3007	99.0279	99.5750	78.5377	10696	105	10777	46	21	45.6522
jmaeng-gatk	SNP	*	HG002complexvar	homalt	99.3008	98.6263	99.9845	20.0307	284610	3964	284586	44	39	88.6364
astatham-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3009	98.6611	99.9489	57.4118	17612	239	17611	9	2	22.2222
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3011	99.7679	98.8387	65.0271	3869	9	3830	45	3	6.6667
egarrison-hhga	SNP	tv	map_l150_m2_e1	*	99.3012	98.8437	99.7631	74.2719	11369	133	11369	27	12	44.4444
jmaeng-gatk	INDEL	*	*	het	99.3015	99.4880	99.1156	62.5254	193139	994	192770	1720	614	35.6977
ckim-dragen	SNP	*	map_l150_m0_e0	homalt	99.3015	99.0707	99.5334	70.2317	4051	38	4053	19	16	84.2105
bgallagher-sentieon	INDEL	I1_5	map_siren	*	99.3016	99.2346	99.3688	80.4976	2982	23	2991	19	5	26.3158
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3017	99.3248	99.2786	49.2620	4266	29	4266	31	2	6.4516
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3017	99.1632	99.4406	55.8914	711	6	711	4	3	75.0000
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3018	99.7594	98.8483	62.1581	2488	6	2489	29	0	0.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3019	98.7847	99.8246	69.4206	569	7	569	1	1	100.0000
jlack-gatk	SNP	*	func_cds	*	99.3020	99.9614	98.6513	31.6355	18143	7	18140	248	1	0.4032
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.3024	98.7283	99.8831	33.4500	1708	22	1709	2	1	50.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3025	98.9571	99.6503	63.7669	854	9	855	3	2	66.6667
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.3028	98.7861	99.8249	33.3463	1709	21	1710	3	2	66.6667
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3031	98.7158	99.8974	47.9345	2921	38	2921	3	1	33.3333
qzeng-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3033	99.1013	99.5062	65.8995	1213	11	1209	6	3	50.0000
qzeng-custom	INDEL	D1_5	segdup	homalt	99.3034	99.4429	99.1643	93.1723	357	2	356	3	2	66.6667
raldana-dualsentieon	INDEL	*	*	het	99.3035	99.0228	99.5858	57.9096	192236	1897	191867	798	611	76.5664
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3035	98.8131	99.7988	59.4317	16234	195	16370	33	3	9.0909
ghariani-varprowl	SNP	tv	map_siren	homalt	99.3038	99.2865	99.3211	57.8404	17117	123	17117	117	71	60.6838
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3038	99.8611	98.7526	69.4861	1438	2	1425	18	1	5.5556
ndellapenna-hhga	INDEL	*	func_cds	het	99.3039	100.0000	98.6175	41.5094	214	0	214	3	0	0.0000
qzeng-custom	SNP	ti	segdup	homalt	99.3042	99.2005	99.4081	87.0359	7445	60	7390	44	39	88.6364
dgrover-gatk	SNP	tv	map_l100_m2_e0	het	99.3042	99.5246	99.0848	72.9235	15702	75	15698	145	24	16.5517
ndellapenna-hhga	SNP	ti	HG002compoundhet	hetalt	99.3043	98.6183	100.0000	23.0458	571	8	571	0	0
jli-custom	SNP	tv	map_l250_m2_e0	homalt	99.3044	99.0395	99.5708	85.4375	928	9	928	4	4	100.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3045	99.1512	99.4582	87.3902	1285	11	1285	7	6	85.7143
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3045	99.1512	99.4582	87.3902	1285	11	1285	7	6	85.7143
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3046	99.1667	99.4429	87.9933	714	6	714	4	3	75.0000
hfeng-pmm2	SNP	tv	map_l125_m2_e1	*	99.3046	99.4537	99.1559	73.9708	16566	91	16564	141	16	11.3475
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.3046	98.8920	99.7207	63.3572	357	4	357	1	1	100.0000
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3050	98.9840	99.6281	65.8771	3215	33	3215	12	2	16.6667
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3051	98.7492	99.8673	37.3573	11290	143	11287	15	0	0.0000
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3053	98.6647	99.9543	56.5280	10936	148	10933	5	2	40.0000
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3053	99.0106	99.6019	68.7862	1501	15	1501	6	1	16.6667
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3054	99.0537	99.5584	45.3803	2931	28	2931	13	0	0.0000
ckim-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3055	99.0812	99.5308	74.4619	63839	592	63852	301	259	86.0465
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3059	99.0585	99.5546	59.8847	19675	187	19668	88	46	52.2727
ltrigg-rtg1	SNP	*	map_l100_m2_e0	*	99.3059	98.8413	99.7748	59.2762	73107	857	73104	165	38	23.0303
ltrigg-rtg1	SNP	*	map_l100_m1_e0	*	99.3061	98.8274	99.7894	56.8168	71554	849	71550	151	36	23.8411
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3062	98.8166	99.8008	85.8631	501	6	501	1	1	100.0000
rpoplin-dv42	SNP	ti	map_l125_m2_e0	*	99.3062	99.1044	99.5088	70.7721	29987	271	29983	148	102	68.9189
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3065	99.4444	99.1690	87.5731	716	4	716	6	6	100.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.3065	99.1690	99.4444	61.2487	358	3	358	2	1	50.0000
hfeng-pmm1	SNP	tv	map_l150_m1_e0	*	99.3066	99.0927	99.5213	73.8197	10813	99	10811	52	14	26.9231
jpowers-varprowl	SNP	tv	*	*	99.3067	99.4773	99.1367	27.6192	964620	5069	964862	8402	1363	16.2223

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge