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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1500 1501 1502 1503 1504 1505 1506 1507 1508 ... 1720 1721 » 75151-75200 / 86044 show all
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2934	99.0605	99.5275	75.3924	1687	16	1685	8	3	37.5000
rpoplin-dv42	SNP	tv	map_l100_m2_e1	*	99.2936	99.2446	99.3427	66.1225	25092	191	25088	166	80	48.1928
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.2941	99.0714	99.5178	62.5456	9602	90	9699	47	29	61.7021
ckim-vqsr	INDEL	I6_15	HG002complexvar	het	99.2942	98.8110	99.7821	59.6661	2327	28	2290	5	4	80.0000
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.2943	98.5985	100.0000	25.4409	1407	20	1395	0	0
dgrover-gatk	SNP	tv	map_l100_m1_e0	het	99.2944	99.5135	99.0763	71.7035	15342	75	15338	143	24	16.7832
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.2945	99.0956	99.4942	40.3814	6684	61	6688	34	20	58.8235
ckim-gatk	SNP	*	HG002complexvar	homalt	99.2945	98.6114	99.9870	20.0389	284567	4007	284543	37	31	83.7838
hfeng-pmm3	SNP	*	map_l150_m2_e1	het	99.2946	99.2143	99.3751	76.6790	20203	160	20197	127	13	10.2362
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2948	99.3780	99.2118	59.1033	8308	52	8308	66	66	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2948	99.3780	99.2118	59.1033	8308	52	8308	66	66	100.0000
jmaeng-gatk	SNP	*	HG002compoundhet	het	99.2949	98.8362	99.7579	46.8998	14013	165	14011	34	28	82.3529
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.2954	98.8082	99.7875	49.1626	912	11	939	2	2	100.0000
hfeng-pmm3	SNP	*	map_l125_m0_e0	*	99.2955	99.2468	99.3441	74.5016	19239	146	19236	127	18	14.1732
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2958	99.4125	99.1794	88.4605	846	5	846	7	6	85.7143
ndellapenna-hhga	SNP	tv	map_l250_m1_e0	homalt	99.2958	98.8318	99.7642	85.6708	846	10	846	2	2	100.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2958	98.9474	99.6466	51.0098	846	9	846	3	0	0.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2958	99.4125	99.1794	88.4605	846	5	846	7	6	85.7143
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2959	98.6897	99.9096	50.3888	6628	88	6630	6	3	50.0000
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.2960	99.5274	99.0657	69.8134	45486	216	45486	429	30	6.9930
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.2960	99.5274	99.0657	69.8134	45486	216	45486	429	30	6.9930
ltrigg-rtg1	SNP	ti	map_siren	het	99.2961	98.9388	99.6561	47.8678	61719	662	61718	213	10	4.6948
egarrison-hhga	INDEL	I1_5	*	*	99.2965	99.0761	99.5179	56.5802	149272	1392	149236	723	442	61.1342
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.2965	99.2968	99.2963	87.3102	1412	10	1411	10	6	60.0000
ckim-gatk	SNP	tv	HG002compoundhet	*	99.2966	98.8905	99.7061	49.4688	8824	99	8821	26	17	65.3846
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.2967	98.9992	99.5959	61.6070	9595	97	9613	39	5	12.8205
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2973	98.6962	99.9057	48.2245	4239	56	4239	4	1	25.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.2974	99.4333	99.1620	40.9075	5088	29	5088	43	42	97.6744
jli-custom	INDEL	*	func_cds	het	99.2974	99.0654	99.5305	45.8015	212	2	212	1	0	0.0000
jli-custom	SNP	tv	map_l250_m1_e0	homalt	99.2974	99.0654	99.5305	84.1518	848	8	848	4	4	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.2975	98.9729	99.6243	77.9307	1349	14	1326	5	3	60.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.2975	98.8995	99.6988	78.3007	1348	15	1324	4	3	75.0000
hfeng-pmm2	SNP	tv	map_l125_m2_e0	*	99.2975	99.4481	99.1474	73.9287	16398	91	16396	141	16	11.3475
jli-custom	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.2976	99.4123	99.1832	67.8581	4736	28	4736	39	8	20.5128
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2979	98.9492	99.6491	52.9703	565	6	568	2	1	50.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.2980	99.5114	99.0854	41.3691	5092	25	5092	47	47	100.0000
gduggal-snapfb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2980	99.6507	98.9479	58.0370	17117	60	17116	182	35	19.2308
hfeng-pmm2	SNP	ti	map_l150_m1_e0	*	99.2981	99.4065	99.1899	76.2408	19595	117	19591	160	20	12.5000
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2985	99.5634	99.0351	56.4261	6157	27	6158	60	1	1.6667
astatham-gatk	INDEL	*	map_l100_m2_e1	homalt	99.2985	99.4536	99.1440	84.8877	1274	7	1274	11	6	54.5455
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.2985	98.8415	99.7597	44.6403	6655	78	6641	16	6	37.5000
jmaeng-gatk	SNP	ti	func_cds	het	99.2988	99.9412	98.6647	33.9419	8499	5	8497	115	1	0.8696
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2989	98.9290	99.6716	45.6458	4249	46	4249	14	0	0.0000
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2994	98.9826	99.6182	37.5156	17998	185	18004	69	46	66.6667
astatham-gatk	SNP	tv	map_l150_m1_e0	homalt	99.2995	98.7836	99.8207	68.8894	3898	48	3898	7	5	71.4286
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3000	98.9583	99.6441	61.5332	570	6	560	2	0	0.0000
ltrigg-rtg2	INDEL	D1_5	HG002complexvar	het	99.3002	99.0946	99.5066	51.3766	20577	188	20368	101	44	43.5644
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3002	99.9010	98.7065	40.6968	18165	18	18162	238	4	1.6807
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3003	99.8758	98.7314	36.7417	7238	9	7238	93	92	98.9247
jlack-gatk	SNP	*	HG002compoundhet	het	99.3003	99.6050	98.9974	47.5779	14122	56	14120	143	30	20.9790

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