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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1499 1500 1501 1502 1503 1504 1505 1506 1507 ... 1720 1721 » 75101-75150 / 86044 show all
jli-custom	SNP	*	map_l100_m2_e1	het	99.2878	99.1428	99.4333	64.8837	46496	402	46493	265	62	23.3962
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2881	99.1766	99.3998	50.9385	1325	11	1325	8	0	0.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2883	99.8050	98.7768	40.6294	4607	9	4603	57	3	5.2632
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2884	98.8435	99.7372	57.4242	16239	190	16321	43	29	67.4419
ltrigg-rtg1	SNP	tv	map_l100_m1_e0	*	99.2885	98.8286	99.7528	57.2287	24214	287	24208	60	9	15.0000
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2885	99.3428	99.2341	89.3299	907	6	907	7	6	85.7143
ndellapenna-hhga	SNP	tv	map_l100_m1_e0	*	99.2885	98.8123	99.7692	62.3765	24210	291	24210	56	24	42.8571
rpoplin-dv42	SNP	tv	map_l100_m2_e0	*	99.2885	99.2370	99.3401	66.0825	24842	191	24838	165	80	48.4848
egarrison-hhga	SNP	tv	map_l100_m0_e0	*	99.2887	98.8632	99.7179	67.1372	10958	126	10958	31	14	45.1613
ltrigg-rtg1	SNP	tv	map_l100_m2_e1	*	99.2889	98.8609	99.7207	59.7908	24995	288	24990	70	9	12.8571
gduggal-snapplat	SNP	tv	func_cds	*	99.2890	99.0391	99.5401	39.3276	4329	42	4329	20	0	0.0000
raldana-dualsentieon	INDEL	I1_5	*	*	99.2891	98.9095	99.6717	56.6470	149021	1643	149065	491	422	85.9470
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2892	99.4524	99.1266	89.6532	908	5	908	8	7	87.5000
gduggal-snapfb	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2893	99.6556	98.9258	48.4715	4051	14	4052	44	5	11.3636
rpoplin-dv42	SNP	ti	map_l125_m1_e0	*	99.2894	99.0830	99.4967	68.8733	29066	269	29062	147	101	68.7075
qzeng-custom	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2899	99.2769	99.3030	49.7051	961	7	8976	63	26	41.2698
hfeng-pmm1	INDEL	*	map_l125_m2_e1	homalt	99.2899	99.3540	99.2258	85.3746	769	5	769	6	3	50.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2900	98.8833	99.7000	54.0745	6641	75	6647	20	7	35.0000
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2905	99.3056	99.2754	83.8445	715	5	685	5	0	0.0000
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2906	99.5974	98.9856	37.6602	7422	30	7416	76	2	2.6316
ndellapenna-hhga	SNP	tv	map_l100_m2_e1	*	99.2907	98.8332	99.7525	64.4232	24988	295	24988	62	24	38.7097
eyeh-varpipe	SNP	*	map_l125_m0_e0	hetalt	99.2908	100.0000	98.5915	76.4120	9	0	70	1	0	0.0000
eyeh-varpipe	SNP	tv	map_l150_m2_e0	hetalt	99.2908	100.0000	98.5915	77.3885	20	0	70	1	0	0.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2908	99.7807	98.8056	70.5939	910	2	910	11	8	72.7273
astatham-gatk	INDEL	*	map_l125_m2_e1	homalt	99.2908	99.4832	99.0991	87.0284	770	4	770	7	4	57.1429
astatham-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2908	99.7807	98.8056	70.4524	910	2	910	11	8	72.7273
hfeng-pmm3	INDEL	*	map_l125_m2_e1	homalt	99.2908	99.4832	99.0991	84.6836	770	4	770	7	3	42.8571
ckim-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2908	99.7807	98.8056	70.5939	910	2	910	11	8	72.7273
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2911	99.8620	98.7267	65.1671	2171	3	2171	28	1	3.5714
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2913	98.6803	99.9099	43.4022	6655	89	6655	6	1	16.6667
hfeng-pmm3	SNP	*	map_l150_m2_e0	het	99.2915	99.2103	99.3729	76.6202	19974	159	19968	126	13	10.3175
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2916	98.8069	99.7809	75.8402	911	11	911	2	1	50.0000
ndellapenna-hhga	SNP	tv	map_l100_m2_e0	*	99.2917	98.8335	99.7541	64.3936	24741	292	24741	61	24	39.3443
ltrigg-rtg1	SNP	tv	map_l100_m2_e0	*	99.2918	98.8495	99.7380	59.7315	24745	288	24740	65	9	13.8462
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.2920	98.7455	99.8446	31.3666	3857	49	3856	6	1	16.6667
ltrigg-rtg2	SNP	*	HG002compoundhet	het	99.2921	98.9773	99.6090	42.0270	14033	145	14011	55	13	23.6364
dgrover-gatk	INDEL	I1_5	segdup	*	99.2921	99.2446	99.3396	94.6513	1051	8	1053	7	2	28.5714
egarrison-hhga	SNP	tv	map_l150_m2_e0	*	99.2922	98.8287	99.7600	74.2574	11222	133	11222	27	12	44.4444
jli-custom	INDEL	D6_15	*	homalt	99.2923	99.8103	98.7797	52.7778	6314	12	6314	78	76	97.4359
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2923	98.9154	99.6721	75.2903	912	10	912	3	1	33.3333
eyeh-varpipe	SNP	ti	map_l125_m1_e0	*	99.2923	99.6523	98.9350	73.2001	29233	102	28704	309	21	6.7961
dgrover-gatk	INDEL	D1_5	map_siren	*	99.2924	99.2916	99.2932	82.3565	3504	25	3512	25	5	20.0000
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.2924	98.8082	99.7814	28.9596	912	11	913	2	2	100.0000
cchapple-custom	INDEL	I1_5	*	*	99.2924	98.8889	99.6992	56.2734	148990	1674	149480	451	355	78.7140
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2924	99.2063	99.3785	88.6959	1750	14	1759	11	11	100.0000
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2927	99.2413	99.3442	65.4836	12426	95	12270	81	75	92.5926
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2927	98.9965	99.5907	51.8966	3650	37	3650	15	12	80.0000
bgallagher-sentieon	INDEL	I1_5	segdup	*	99.2928	99.3390	99.2467	94.4424	1052	7	1054	8	2	25.0000
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2929	99.5560	99.0312	67.2462	17490	78	17480	171	15	8.7719
jpowers-varprowl	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2932	99.0454	99.5422	62.8527	6952	67	6958	32	4	12.5000

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