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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
75001-75050 / 86044 show all
hfeng-pmm2SNPtvmap_l100_m2_e0het
99.2723
99.4486
99.0966
70.7844
15690871568614312
8.3916
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2725
99.8634
98.6886
65.8031
17544241753423315
6.4378
bgallagher-sentieonINDELI6_15HG002complexvarhet
99.2727
98.8535
99.6955
59.4318
232827229276
85.7143
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.2727
99.3932
99.1525
71.5271
819581971
14.2857
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.2731
99.5818
98.9663
47.1998
214392202235
21.7391
raldana-dualsentieonINDEL*segduphomalt
99.2731
99.5833
98.9648
93.2239
9564956109
90.0000
cchapple-customSNPtvfunc_cdshet
99.2733
99.8495
98.7037
37.1216
265342665350
0.0000
bgallagher-sentieonSNP*map_l125_m2_e0*
99.2735
99.4499
99.0978
72.9518
464662574646042370
16.5485
ltrigg-rtg2INDELI1_5map_l100_m0_e0homalt
99.2736
99.5192
99.0291
72.9659
207120421
50.0000
rpoplin-dv42SNPtvmap_l150_m2_e0homalt
99.2738
98.7754
99.7773
74.0315
403350403399
100.0000
hfeng-pmm3SNP*map_l150_m1_e0het
99.2744
99.1820
99.3670
75.4908
191581581915212213
10.6557
astatham-gatkSNPtiHG002compoundhet*
99.2746
98.6669
99.8899
35.7263
17245233172431918
94.7368
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2748
99.1091
99.4411
74.0482
6385757463870359327
91.0864
ckim-dragenSNP*func_cdshet
99.2748
99.9642
98.5949
34.9057
111574111571591
0.6289
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.2749
98.6108
99.9480
59.6368
383354384322
100.0000
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2750
99.3899
99.1604
41.1634
47242947244040
100.0000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.2751
99.6037
98.9488
87.5654
1508615061613
81.2500
rpoplin-dv42SNPtvmap_l100_m1_e0*
99.2751
99.2204
99.3298
64.0760
243101912430616480
48.7805
bgallagher-sentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2753
99.1071
99.4439
65.2571
3219293219184
22.2222
ckim-dragenINDEL*segduphomalt
99.2754
99.8958
98.6626
93.6124
95919591312
92.3077
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2755
98.9912
99.5615
74.4850
6378165063794281255
90.7473
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.2755
99.4715
99.0802
50.4204
1035255103419689
92.7083
rpoplin-dv42SNP*map_l100_m2_e0het
99.2759
99.1530
99.3992
65.9847
4600639345994278141
50.7194
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.2759
99.4208
99.1315
77.0261
24031423972112
57.1429
dgrover-gatkSNPtvmap_l125_m0_e0homalt
99.2760
98.7843
99.7726
69.4073
219427219453
60.0000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.2761
99.4855
99.0676
75.6554
21271121252018
90.0000
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.2764
99.1329
99.4203
34.7086
17151517151010
100.0000
jli-customINDELD1_5map_sirenhet
99.2764
99.3412
99.2116
78.6894
2262152265183
16.6667
hfeng-pmm2SNPtvmap_l100_m2_e1het
99.2765
99.4541
99.0995
70.8119
15851871584714412
8.3333
hfeng-pmm2SNPtvmap_l125_m1_e0*
99.2768
99.4318
99.1223
72.3649
15925911592314116
11.3475
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.2771
98.9642
99.5919
45.6545
11752123117144817
35.4167
raldana-dualsentieonINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.2771
98.5646
100.0000
44.2645
412641300
ckim-dragenINDELI1_5**
99.2774
99.1830
99.3720
58.7161
1494331231149372944540
57.2034
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2779
98.6498
99.9141
39.6579
233832232622
100.0000
rpoplin-dv42SNP*map_l100_m2_e1het
99.2783
99.1577
99.3992
66.0072
4650339546491281142
50.5338
gduggal-bwafbSNP*HG002compoundhethomalt
99.2787
99.5826
98.9767
38.6655
10737451073611191
81.9820
eyeh-varpipeSNPtimap_l125_m2_e0*
99.2792
99.6596
98.9018
74.7286
301551032962932921
6.3830
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.2793
99.0236
99.5363
51.7187
36513636491715
88.2353
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.2795
100.0000
98.5694
67.5186
138701378201
5.0000
hfeng-pmm1INDEL*map_l125_m2_e0homalt
99.2796
99.3447
99.2147
85.2510
758575863
50.0000
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.2797
99.2823
99.2771
46.2435
415341230
0.0000
bgallagher-sentieonSNP*map_l125_m2_e1*
99.2798
99.4555
99.1048
72.9953
469452574693942470
16.5094
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.2798
99.1742
99.3856
72.8070
132111129486
75.0000
eyeh-varpipeSNPtimap_l125_m2_e1*
99.2798
99.6598
98.9027
74.7802
304651042992533221
6.3253
bgallagher-sentieonSNPtimap_l100_m1_e0het
99.2799
99.4757
99.0849
68.0556
297851572977827538
13.8182
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.2800
98.7275
99.8388
67.9580
186224185833
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.2803
99.4811
99.0803
50.1719
1035354103429688
91.6667
astatham-gatkINDEL*map_l125_m2_e0homalt
99.2806
99.4758
99.0862
86.9395
759475974
57.1429
raldana-dualsentieonINDELI1_5map_l100_m0_e0homalt
99.2806
99.5192
99.0431
78.4758
207120721
50.0000
hfeng-pmm3INDEL*map_l125_m2_e0homalt
99.2806
99.4758
99.0862
84.5627
759475973
42.8571