PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
74951-75000 / 86044 show all
ckim-dragenINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2667
99.3211
99.2123
71.8135
55593855424435
79.5455
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.2668
99.4808
99.0537
68.1013
32571732453129
93.5484
cchapple-customSNPtiHG002compoundhet*
99.2669
98.9816
99.5539
35.4095
17300178174067864
82.0513
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.2670
98.6631
99.8783
77.1278
656889656885
62.5000
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.2677
99.3946
99.1411
57.1258
4269264271376
16.2162
jmaeng-gatkSNPtvHG002compoundhet*
99.2678
98.7672
99.7735
49.6292
881311088102017
85.0000
bgallagher-sentieonINDEL***
99.2678
99.2143
99.3213
59.6036
341835270734170323351924
82.3983
ndellapenna-hhgaINDELI1_5map_l125_m2_e0homalt
99.2679
99.4135
99.1228
84.9406
339233931
33.3333
jmaeng-gatkINDELI1_5map_l125_m2_e0homalt
99.2679
99.4135
99.1228
84.7048
339233932
66.6667
ltrigg-rtg2INDELD1_5map_sirenhomalt
99.2681
98.7158
99.8267
73.6590
115315115221
50.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.2683
98.5472
100.0000
30.9086
244236244100
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.2683
98.7864
99.7549
68.4699
8141081421
50.0000
jlack-gatkINDEL**homalt
99.2685
99.7907
98.7518
57.7386
12491026212492315791542
97.6567
gduggal-snapfbSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.2685
99.7898
98.7526
38.0155
142431425183
16.6667
rpoplin-dv42INDEL*segduphomalt
99.2685
98.9583
99.5807
93.3565
9501095044
100.0000
asubramanian-gatkINDEL**homalt
99.2686
99.5207
99.0178
58.9491
1245726001245991236954
77.1845
bgallagher-sentieonSNPtisegduphet
99.2686
99.8587
98.6854
90.5804
1201317120111602
1.2500
hfeng-pmm1SNP*map_l125_m2_e1het
99.2688
98.9372
99.6025
71.5784
293253152931911729
24.7863
gduggal-bwavardSNPtifunc_cdshet
99.2690
99.0710
99.4677
32.1944
84257984094515
33.3333
ckim-dragenINDELD1_5map_sirenhomalt
99.2693
98.8870
99.6546
81.5458
115513115443
75.0000
jmaeng-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2695
99.3226
99.2164
76.1399
4794432747736377289
76.6578
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.2697
98.7490
99.7960
33.5412
244731244650
0.0000
bgallagher-sentieonSNPtimap_l100_m2_e1het
99.2699
99.4832
99.0575
69.3770
308001603079329338
12.9693
gduggal-snapfbSNPtiHG002complexvar*
99.2700
99.6259
98.9167
19.8956
50653519025070435553819
14.7488
eyeh-varpipeSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
99.2701
100.0000
98.5507
78.2334
506810
0.0000
hfeng-pmm1INDELI1_5map_l150_m2_e1homalt
99.2701
100.0000
98.5507
87.7078
204020432
66.6667
jli-customINDELI1_5map_l150_m2_e1homalt
99.2701
100.0000
98.5507
87.4469
204020432
66.6667
hfeng-pmm3INDELI1_5map_l150_m2_e1homalt
99.2701
100.0000
98.5507
86.9318
204020432
66.6667
hfeng-pmm2SNP*map_l100_m0_e0*
99.2701
99.4001
99.1404
70.5461
326441973264028334
12.0141
hfeng-pmm2INDELI1_5map_l150_m2_e1homalt
99.2701
100.0000
98.5507
87.4545
204020432
66.6667
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.2701
100.0000
98.5507
70.7627
6806811
100.0000
bgallagher-sentieonINDELI1_5map_l150_m2_e1homalt
99.2701
100.0000
98.5507
88.2051
204020432
66.6667
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
99.2701
98.5507
100.0000
89.7436
6816800
astatham-gatkINDELI1_5map_l150_m2_e1homalt
99.2701
100.0000
98.5507
88.3838
204020432
66.6667
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.2702
99.4536
99.0876
76.1116
546354351
20.0000
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.2704
99.1149
99.4264
74.8452
53754853733127
87.0968
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.2704
99.1149
99.4264
74.8452
53754853733127
87.0968
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.2708
98.9378
99.6061
37.1789
10618114106204229
69.0476
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.2708
99.4280
99.1141
69.5332
194671121946717416
9.1954
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.2708
99.4280
99.1141
69.5332
194671121946717416
9.1954
raldana-dualsentieonINDELD1_5map_l100_m2_e1homalt
99.2713
98.8710
99.6748
82.3782
613761322
100.0000
cchapple-customINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
99.2714
98.9362
99.6089
56.7644
465576432
66.6667
cchapple-customINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.2719
98.7603
99.7888
58.8261
9561294522
100.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.2719
98.8007
99.7476
56.4979
1697120616992436
13.9535
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.2720
98.6962
99.8546
54.0539
825110982391212
100.0000
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.2720
98.6962
99.8546
54.0539
825110982391212
100.0000
jli-customSNPtvmap_l125_m2_e1*
99.2722
99.0875
99.4576
69.1406
16505152165049026
28.8889
jmaeng-gatkINDELI1_5map_l125_m2_e1homalt
99.2722
99.4169
99.1279
84.8990
341234132
66.6667
astatham-gatkSNPtv*het
99.2722
98.5893
99.9647
23.3815
583349834758328220635
16.9903
ndellapenna-hhgaINDELI1_5map_l125_m2_e1homalt
99.2722
99.4169
99.1279
85.2297
341234131
33.3333