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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1495 1496 1497 1498 1499 1500 1501 1502 1503 ... 1720 1721 » 74901-74950 / 86044 show all
ndellapenna-hhga	INDEL	I1_5	map_l150_m0_e0	homalt	99.2593	100.0000	98.5294	88.5714	67	0	67	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	map_l150_m0_e0	homalt	99.2593	100.0000	98.5294	88.9610	67	0	67	1	1	100.0000
bgallagher-sentieon	INDEL	I1_5	map_l150_m2_e0	homalt	99.2593	100.0000	98.5294	88.1257	201	0	201	3	2	66.6667
astatham-gatk	INDEL	I1_5	map_l150_m2_e0	homalt	99.2593	100.0000	98.5294	88.3095	201	0	201	3	2	66.6667
gduggal-bwafb	INDEL	I1_5	map_l150_m0_e0	homalt	99.2593	100.0000	98.5294	90.3272	67	0	67	1	1	100.0000
ckim-gatk	SNP	tv	HG002compoundhet	het	99.2595	98.9728	99.5478	55.8932	4625	48	4623	21	13	61.9048
hfeng-pmm1	INDEL	D16_PLUS	*	homalt	99.2597	99.0544	99.4659	65.7799	1676	16	1676	9	4	44.4444
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2598	99.1413	99.3785	84.5990	1501	13	1439	9	0	0.0000
egarrison-hhga	SNP	ti	map_l125_m2_e0	het	99.2599	98.7550	99.7699	71.8619	18641	235	18641	43	16	37.2093
egarrison-hhga	SNP	ti	map_l125_m2_e1	het	99.2602	98.7583	99.7671	71.8965	18850	237	18850	44	16	36.3636
ltrigg-rtg2	INDEL	I1_5	map_l150_m2_e1	homalt	99.2605	99.0196	99.5025	85.2747	202	2	200	1	0	0.0000
raldana-dualsentieon	INDEL	D1_5	map_l100_m2_e0	homalt	99.2605	98.8543	99.6700	82.3014	604	7	604	2	2	100.0000
rpoplin-dv42	INDEL	I1_5	map_l100_m2_e1	homalt	99.2606	99.4444	99.0775	82.2062	537	3	537	5	3	60.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2612	99.0548	99.4685	84.3994	2620	25	2620	14	6	42.8571
gduggal-snapvard	SNP	tv	func_cds	homalt	99.2613	98.5915	99.9402	26.1484	1680	24	1671	1	1	100.0000
hfeng-pmm2	SNP	tv	map_l100_m1_e0	het	99.2617	99.4357	99.0884	69.5075	15330	87	15326	141	12	8.5106
ltrigg-rtg2	INDEL	I1_5	map_l125_m2_e0	homalt	99.2619	98.8270	99.7006	80.6936	337	4	333	1	0	0.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.2620	98.5348	100.0000	70.7344	538	8	530	0	0
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2623	98.7000	99.8311	74.5091	2961	39	2955	5	1	20.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.2624	99.1501	99.3749	64.2935	6183	53	6200	39	5	12.8205
ndellapenna-hhga	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.2625	98.9379	99.5892	62.6573	1211	13	1212	5	5	100.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2626	99.2439	99.2814	84.2685	2625	20	2625	19	7	36.8421
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.2628	99.1167	99.4094	87.9803	2693	24	2693	16	14	87.5000
ltrigg-rtg1	INDEL	I1_5	map_l150_m2_e1	homalt	99.2629	100.0000	98.5366	88.2723	204	0	202	3	1	33.3333
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2629	99.2900	99.2358	50.5266	1818	13	1818	14	0	0.0000
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	het	99.2634	99.4775	99.0503	69.3746	30462	160	30455	292	38	13.0137
ckim-dragen	INDEL	*	*	homalt	99.2636	99.8234	98.7101	59.5235	124951	221	124887	1632	1607	98.4681
asubramanian-gatk	INDEL	D1_5	*	*	99.2637	98.9281	99.6016	61.0980	145172	1573	145253	581	383	65.9208
rpoplin-dv42	SNP	*	map_l100_m1_e0	het	99.2638	99.1402	99.3876	64.2170	44969	390	44957	277	141	50.9025
egarrison-hhga	SNP	*	HG002compoundhet	homalt	99.2639	99.4064	99.1218	35.3785	10718	64	10722	95	82	86.3158
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2639	98.7961	99.7361	66.9655	2626	32	2646	7	4	57.1429
egarrison-hhga	INDEL	D1_5	map_l100_m2_e0	homalt	99.2641	99.3453	99.1830	83.4862	607	4	607	5	4	80.0000
hfeng-pmm1	SNP	*	map_l125_m2_e0	het	99.2641	98.9290	99.6016	71.5339	29004	314	28998	116	29	25.0000
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2643	98.8474	99.6847	73.5302	5060	59	5058	16	12	75.0000
bgallagher-sentieon	SNP	*	map_l125_m1_e0	*	99.2644	99.4418	99.0876	71.3529	45074	253	45068	415	70	16.8675
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.2647	99.7712	98.7633	53.6568	5668	13	5670	71	69	97.1831
bgallagher-sentieon	SNP	*	segdup	het	99.2648	99.8268	98.7091	91.1291	17287	30	17281	226	2	0.8850
jli-custom	SNP	tv	map_l125_m2_e0	*	99.2648	99.0782	99.4521	69.0688	16337	152	16336	90	26	28.8889
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.2650	98.9969	99.5345	87.4939	1283	13	1283	6	4	66.6667
ndellapenna-hhga	SNP	*	map_l250_m1_e0	homalt	99.2653	98.7414	99.7948	85.6165	2432	31	2432	5	5	100.0000
qzeng-custom	SNP	*	segdup	homalt	99.2653	99.1250	99.4061	87.8458	10649	94	10544	63	57	90.4762
bgallagher-sentieon	INDEL	D1_5	map_siren	*	99.2660	99.4899	99.0431	81.6382	3511	18	3519	34	6	17.6471
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2661	99.8221	98.7161	56.1302	6173	11	6305	82	1	1.2195
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2662	99.3541	99.1784	74.9780	1692	11	1690	14	3	21.4286
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2664	99.8896	98.6509	37.0615	7239	8	7239	99	98	98.9899
hfeng-pmm3	INDEL	*	map_l100_m1_e0	homalt	99.2665	99.2665	99.2665	80.9205	1218	9	1218	9	4	44.4444
ckim-vqsr	INDEL	I1_5	map_l150_m2_e1	homalt	99.2665	99.5098	99.0244	88.9488	203	1	203	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	map_l150_m2_e1	homalt	99.2665	99.5098	99.0244	88.6364	203	1	203	2	1	50.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2666	99.8474	98.6925	59.1977	3925	6	3925	52	1	1.9231
mlin-fermikit	SNP	tv	func_cds	*	99.2667	99.1078	99.4262	22.7208	4332	39	4332	25	14	56.0000

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