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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
74851-74900 / 86044 show all
egarrison-hhgaSNPtimap_l125_m1_e0het
99.2515
98.7299
99.7787
70.5410
18034232180344016
40.0000
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.2515
98.6760
99.8336
71.5436
238532240044
100.0000
rpoplin-dv42SNP*map_l125_m2_e0*
99.2517
99.0733
99.4307
70.7955
4629043346284265170
64.1509
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.2519
99.5000
99.0050
61.8596
199119922
100.0000
hfeng-pmm2SNP*map_l150_m2_e1*
99.2528
99.3946
99.1113
77.7651
320151953200928734
11.8467
gduggal-bwafbSNPtimap_l150_m0_e0homalt
99.2528
98.6237
99.8899
77.4057
272338272332
66.6667
dgrover-gatkSNPtvmap_l125_m2_e1*
99.2530
99.3156
99.1905
74.7864
165431141654113527
20.0000
ltrigg-rtg2INDEL***
99.2539
98.8759
99.6347
56.1284
34066838733404111248516
41.3462
ckim-vqsrINDEL***
99.2541
99.0614
99.4476
60.7768
341308323434116718951532
80.8443
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.2545
99.2866
99.2223
77.4843
1531111531129
75.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2546
99.1437
99.3657
50.4529
2663232663170
0.0000
astatham-gatkSNPtvmap_l100_m0_e0homalt
99.2548
98.6999
99.8159
61.6440
379650379674
57.1429
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2550
99.5338
98.9778
48.7637
83273983278684
97.6744
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.2551
98.8889
99.6241
60.5341
267326510
0.0000
dgrover-gatkINDELD1_5map_sirenhet
99.2553
99.3852
99.1259
82.2139
2263142268201
5.0000
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.2554
98.9184
99.5947
75.9330
65857266352713
48.1481
rpoplin-dv42INDELI1_5map_l150_m2_e0homalt
99.2556
99.5025
99.0099
88.4966
200120021
50.0000
ckim-vqsrINDELI1_5map_l150_m2_e0homalt
99.2556
99.5025
99.0099
88.8950
200120021
50.0000
gduggal-bwavardSNPti*het
99.2556
99.0550
99.4571
24.6552
126978312114126578969102002
28.9725
egarrison-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.2558
98.8879
99.6265
37.2904
66697566682512
48.0000
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.2559
99.3087
99.2032
69.9329
37352637353029
96.6667
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.2559
99.3087
99.2032
69.9329
37352637353029
96.6667
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.2560
99.0686
99.4441
78.7870
65956266193715
40.5405
bgallagher-sentieonSNPtvsegduphet
99.2561
99.7541
98.7631
92.1695
5274135270660
0.0000
ltrigg-rtg1SNP*map_sirenhet
99.2561
98.9032
99.6115
48.6936
899929988999635116
4.5584
ckim-dragenINDELI1_5map_sirenhomalt
99.2562
99.0924
99.4205
77.9401
120111120175
71.4286
cchapple-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2564
99.6414
98.8744
60.9154
352921273548740450
12.3762
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.2565
99.2593
99.2537
65.0131
268226620
0.0000
ckim-dragenINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.2565
100.0000
98.5240
66.2935
267026744
100.0000
ltrigg-rtg2SNP**hetalt
99.2565
99.5408
98.9738
40.5020
867486899
100.0000
ltrigg-rtg2SNPtv*hetalt
99.2565
99.5408
98.9738
40.5020
867486899
100.0000
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.2565
99.2593
99.2537
60.8759
268226620
0.0000
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.2568
98.6869
99.8334
39.3004
10221136101861716
94.1176
ltrigg-rtg2SNPtimap_sirenhet
99.2569
98.8202
99.6976
45.2238
616457366164618711
5.8824
ckim-dragenINDELD6_15HG002complexvarhet
99.2569
98.9103
99.6060
59.0976
30863430341210
83.3333
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
99.2570
99.3617
99.1525
68.8860
467346843
75.0000
rpoplin-dv42SNP*map_l125_m2_e1*
99.2571
99.0784
99.4365
70.8435
4676743546761265170
64.1509
ndellapenna-hhgaINDELI1_5map_sirenhomalt
99.2574
99.2574
99.2574
77.6960
12039120395
55.5556
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2575
99.0562
99.4596
77.8403
4198404233239
39.1304
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2575
98.7987
99.7206
70.8721
6365777463532178101
56.7416
ckim-vqsrINDEL*HG002complexvar*
99.2578
98.8640
99.6548
58.2159
7606487475924263222
84.4106
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.2583
99.5434
98.9748
37.3981
1068349107161115
4.5045
hfeng-pmm1INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2583
98.7709
99.7505
77.4015
6027755998155
33.3333
bgallagher-sentieonSNPtvmap_l250_m2_e1homalt
99.2585
99.0486
99.4692
86.2982
937993754
80.0000
hfeng-pmm3INDEL*map_l100_m2_e1homalt
99.2587
99.2974
99.2200
82.2364
127291272104
40.0000
hfeng-pmm1INDELI1_5map_l150_m2_e0homalt
99.2593
100.0000
98.5294
87.5686
201020132
66.6667
jli-customINDELI1_5map_l150_m2_e0homalt
99.2593
100.0000
98.5294
87.3449
201020132
66.6667
hfeng-pmm2INDELI1_5map_l150_m2_e0homalt
99.2593
100.0000
98.5294
87.3449
201020132
66.6667
hfeng-pmm3INDELI1_5map_l150_m2_e0homalt
99.2593
100.0000
98.5294
86.7961
201020132
66.6667
ckim-vqsrINDELI1_5map_l150_m0_e0homalt
99.2593
100.0000
98.5294
89.5385
6706711
100.0000