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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1492 1493 1494 1495 1496 1497 1498 1499 1500 ... 1720 1721 » 74751-74800 / 86044 show all
bgallagher-sentieon	SNP	tv	map_l250_m1_e0	homalt	99.2393	99.0654	99.4138	85.1935	848	8	848	5	4	80.0000
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2393	99.5160	98.9641	59.7528	2673	13	2675	28	4	14.2857
ndellapenna-hhga	INDEL	I1_5	*	*	99.2393	98.9360	99.5445	55.9242	149061	1603	149032	682	431	63.1965
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2394	99.2481	99.2308	79.1667	264	2	258	2	1	50.0000
dgrover-gatk	SNP	ti	map_l150_m2_e1	*	99.2396	99.1990	99.2803	78.3146	20557	166	20553	149	36	24.1611
hfeng-pmm1	SNP	ti	map_l125_m2_e0	het	99.2396	98.8716	99.6103	71.4782	18663	213	18659	73	18	24.6575
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2401	98.9858	99.4956	77.2155	5368	55	5326	27	13	48.1481
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2401	98.9858	99.4956	77.2155	5368	55	5326	27	13	48.1481
ltrigg-rtg2	SNP	ti	map_l100_m1_e0	*	99.2402	98.6481	99.8395	53.2325	47283	648	47285	76	17	22.3684
jmaeng-gatk	INDEL	*	HG002complexvar	*	99.2404	98.8731	99.6104	58.2744	76071	867	75939	297	248	83.5017
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.2405	99.4924	98.9899	56.9565	196	1	196	2	2	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.2405	99.4924	98.9899	55.7047	196	1	196	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.2405	99.4924	98.9899	60.2410	196	1	196	2	2	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.2405	99.4924	98.9899	60.4000	196	1	196	2	1	50.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.2405	99.4924	98.9899	54.3779	196	1	196	2	2	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.2405	99.4924	98.9899	60.4000	196	1	196	2	1	50.0000
egarrison-hhga	INDEL	D1_5	map_l100_m1_e0	homalt	99.2405	99.3243	99.1568	82.6608	588	4	588	5	4	80.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.2405	99.4924	98.9899	60.4000	196	1	196	2	1	50.0000
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2409	98.7069	99.7807	72.5962	458	6	455	1	0	0.0000
jmaeng-gatk	INDEL	I1_5	*	*	99.2409	99.0383	99.4444	59.6817	149215	1449	149263	834	391	46.8825
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2411	99.0960	99.3867	70.6527	3727	34	3727	23	22	95.6522
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2411	99.0960	99.3867	70.6527	3727	34	3727	23	22	95.6522
ckim-dragen	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2414	99.9435	98.5491	72.6182	3535	2	3532	52	52	100.0000
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.2415	98.8665	99.6193	67.1895	4710	54	4710	18	5	27.7778
hfeng-pmm3	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2415	98.7053	99.7836	77.2969	6023	79	5994	13	3	23.0769
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2418	98.9224	99.5633	72.5090	459	5	456	2	0	0.0000
ckim-dragen	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.2418	99.0470	99.4374	74.2668	63817	614	63806	361	326	90.3047
jlack-gatk	SNP	ti	map_l125_m2_e0	homalt	99.2423	98.5913	99.9019	66.3888	11198	160	11198	11	9	81.8182
hfeng-pmm1	SNP	ti	map_l125_m0_e0	*	99.2424	99.0519	99.4336	73.9101	12641	121	12639	72	20	27.7778
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2424	98.4962	100.0000	80.9731	262	4	262	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2424	98.4962	100.0000	81.1782	262	4	262	0	0
astatham-gatk	INDEL	I16_PLUS	HG002complexvar	het	99.2424	98.4962	100.0000	64.5705	655	10	631	0	0
dgrover-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.2427	99.0344	99.4519	67.0189	4718	46	4718	26	9	34.6154
asubramanian-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.2429	98.9091	99.5790	55.5792	27654	305	27674	117	13	11.1111
ltrigg-rtg2	SNP	ti	map_l100_m2_e0	*	99.2429	98.6642	99.8285	55.8705	48307	654	48309	83	19	22.8916
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2430	99.1304	99.3558	84.2935	2622	23	2622	17	7	41.1765
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.2432	98.7413	99.7502	68.4984	30751	392	30752	77	8	10.3896
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.2432	98.7413	99.7502	68.4984	30751	392	30752	77	8	10.3896
egarrison-hhga	SNP	ti	map_l125_m0_e0	*	99.2437	98.7149	99.7782	73.5653	12598	164	12598	28	14	50.0000
jli-custom	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.2437	99.5383	98.9508	69.9567	1509	7	1509	16	2	12.5000
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.2442	99.0799	99.4092	87.9842	2692	25	2692	16	14	87.5000
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2442	98.7151	99.7789	49.7012	3611	47	3611	8	4	50.0000
rpoplin-dv42	INDEL	I1_5	map_l150_m1_e0	homalt	99.2443	99.4949	98.9950	87.0358	197	1	197	2	1	50.0000
ckim-vqsr	INDEL	I1_5	map_l150_m1_e0	homalt	99.2443	99.4949	98.9950	87.4921	197	1	197	2	1	50.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2444	98.7425	99.7514	50.7816	3612	46	3612	9	3	33.3333
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2445	98.8084	99.6845	73.8057	5058	61	5056	16	7	43.7500
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.2450	99.0076	99.4836	62.5686	4789	48	4816	25	3	12.0000
jpowers-varprowl	SNP	ti	map_l125_m2_e1	homalt	99.2450	98.6647	99.8322	70.9730	11305	153	11305	19	15	78.9474
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2451	98.5461	99.9540	42.2689	2169	32	2172	1	1	100.0000
jli-custom	INDEL	I1_5	map_l100_m2_e1	*	99.2452	98.9247	99.5677	82.8600	1380	15	1382	6	3	50.0000

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