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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1491 1492 1493 1494 1495 1496 1497 1498 1499 ... 1720 1721 » 74701-74750 / 86044 show all
hfeng-pmm1	SNP	ti	map_l125_m1_e0	het	99.2306	98.8613	99.6028	70.2477	18058	208	18054	72	18	25.0000
ltrigg-rtg1	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.2308	98.4733	100.0000	63.6671	516	8	537	0	0
ltrigg-rtg1	INDEL	I1_5	map_l125_m1_e0	homalt	99.2310	99.3884	99.0741	82.8662	325	2	321	3	1	33.3333
ghariani-varprowl	SNP	*	HG002complexvar	het	99.2312	99.6262	98.8393	22.3346	463752	1740	464023	5449	138	2.5326
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2313	98.7627	99.7044	62.6862	1357	17	1349	4	1	25.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.2314	98.7059	99.7625	51.4137	839	11	840	2	2	100.0000
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2318	98.9924	99.4723	85.2271	786	8	754	4	0	0.0000
ghariani-varprowl	SNP	ti	map_l125_m2_e1	homalt	99.2318	98.6472	99.8234	69.1261	11303	155	11303	20	15	75.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2319	99.4770	98.9880	80.7127	6847	36	6847	70	12	17.1429
gduggal-bwavard	SNP	tv	*	*	99.2324	99.0032	99.4627	26.1679	960032	9666	955309	5161	1540	29.8392
astatham-gatk	SNP	ti	segdup	*	99.2327	98.6385	99.8342	89.7728	19271	266	19269	32	6	18.7500
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.2336	99.4427	99.0254	72.4471	28552	160	28552	281	26	9.2527
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.2336	99.4427	99.0254	72.4471	28552	160	28552	281	26	9.2527
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2339	98.8263	99.6450	83.3103	842	10	842	3	3	100.0000
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2339	98.4795	100.0000	52.7497	842	13	842	0	0
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2342	98.9813	99.4883	56.1128	1749	18	1750	9	6	66.6667
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2343	99.5392	98.9313	39.6684	1944	9	1944	21	20	95.2381
asubramanian-gatk	INDEL	I1_5	HG002complexvar	*	99.2344	98.6572	99.8183	57.3625	32915	448	32967	60	50	83.3333
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.2346	98.7619	99.7118	60.6427	1037	13	1038	3	3	100.0000
raldana-dualsentieon	INDEL	D16_PLUS	*	homalt	99.2348	99.6454	98.8277	68.4541	1686	6	1686	20	16	80.0000
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2348	98.9437	99.5277	84.3986	843	9	843	4	4	100.0000
egarrison-hhga	SNP	*	map_l125_m2_e1	het	99.2353	98.7314	99.7444	71.4034	29264	376	29264	75	28	37.3333
egarrison-hhga	SNP	*	map_l125_m2_e0	het	99.2355	98.7312	99.7450	71.3586	28946	372	28946	74	28	37.8378
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2355	99.0692	99.4023	51.3626	2661	25	2661	16	1	6.2500
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2357	98.7135	99.7636	54.0717	844	11	844	2	0	0.0000
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2357	98.7135	99.7636	51.8223	844	11	844	2	0	0.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2357	98.7135	99.7636	53.9967	844	11	844	2	0	0.0000
jpowers-varprowl	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2357	99.3126	99.1588	62.5047	10836	75	10845	92	50	54.3478
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.2358	99.4530	99.0196	68.7861	909	5	909	9	0	0.0000
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2360	99.6967	98.7794	42.1600	4602	14	4613	57	9	15.7895
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2363	98.5269	99.9560	35.0014	4548	68	4544	2	1	50.0000
rpoplin-dv42	SNP	*	map_l125_m1_e0	*	99.2363	99.0558	99.4176	68.8661	44899	428	44893	263	168	63.8783
raldana-dualsentieon	INDEL	D1_5	map_l100_m1_e0	homalt	99.2366	98.8176	99.6593	81.5176	585	7	585	2	2	100.0000
dgrover-gatk	SNP	ti	map_l150_m2_e0	*	99.2366	99.1907	99.2825	78.2548	20346	166	20342	147	36	24.4898
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2366	99.7807	98.6985	70.3346	910	2	910	12	9	75.0000
jmaeng-gatk	INDEL	I1_5	map_l125_m1_e0	homalt	99.2366	99.3884	99.0854	83.4677	325	2	325	3	2	66.6667
ltrigg-rtg2	INDEL	I1_5	map_l150_m1_e0	homalt	99.2366	98.9899	99.4845	82.8773	196	2	193	1	0	0.0000
ltrigg-rtg1	INDEL	I1_5	map_l150_m0_e0	homalt	99.2366	100.0000	98.4848	88.7564	67	0	65	1	1	100.0000
ltrigg-rtg1	INDEL	I1_5	map_l150_m1_e0	homalt	99.2366	100.0000	98.4848	86.5398	198	0	195	3	1	33.3333
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2366	98.8304	99.6462	50.2931	845	10	845	3	0	0.0000
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.2366	98.4848	100.0000	80.0604	130	2	132	0	0
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2372	98.7305	99.7490	37.0877	7155	92	7154	18	18	100.0000
ltrigg-rtg1	INDEL	I1_5	HG002complexvar	het	99.2372	98.7905	99.6881	51.9353	17969	220	17257	54	28	51.8519
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2375	99.0025	99.4737	82.2678	397	4	378	2	1	50.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.2378	98.6999	99.7817	29.1570	911	12	914	2	2	100.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2382	99.0025	99.4751	81.5138	397	4	379	2	1	50.0000
jpowers-varprowl	SNP	ti	map_l125_m2_e0	homalt	99.2383	98.6529	99.8307	70.9546	11205	153	11205	19	15	78.9474
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2387	99.0092	99.4691	88.8279	1499	15	1499	8	7	87.5000
gduggal-bwafb	SNP	*	map_siren	*	99.2387	99.3893	99.0885	58.6242	145335	893	145339	1337	225	16.8287
asubramanian-gatk	INDEL	D1_5	HG002complexvar	het	99.2391	98.6082	99.8781	56.4759	20476	289	20484	25	15	60.0000

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