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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1487 1488 1489 1490 1491 1492 1493 1494 1495 ... 1720 1721 » 74501-74550 / 86044 show all
ckim-vqsr	SNP	ti	HG002compoundhet	het	99.2006	98.5692	99.8402	40.6564	9369	136	9369	15	13	86.6667
ltrigg-rtg1	SNP	*	*	hetalt	99.2007	99.6556	98.7500	40.5405	868	3	869	11	11	100.0000
ltrigg-rtg1	SNP	tv	*	hetalt	99.2007	99.6556	98.7500	40.5405	868	3	869	11	11	100.0000
jli-custom	SNP	ti	map_l150_m1_e0	*	99.2008	98.8636	99.5403	71.1664	19488	224	19486	90	35	38.8889
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2009	99.0050	99.3976	60.0802	995	10	990	6	5	83.3333
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2011	99.7140	98.6934	41.6778	18131	52	18128	240	3	1.2500
gduggal-snapfb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2011	99.6842	98.7226	58.1229	11049	35	11052	143	20	13.9860
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2012	98.4859	99.9268	62.0594	1366	21	1366	1	0	0.0000
egarrison-hhga	SNP	*	map_l125_m0_e0	*	99.2012	98.6588	99.7496	73.5088	19125	260	19125	48	23	47.9167
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.2014	99.6118	98.7944	67.9415	19503	76	19503	238	15	6.3025
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.2014	99.6118	98.7944	67.9415	19503	76	19503	238	15	6.3025
ltrigg-rtg2	INDEL	D1_5	segdup	het	99.2017	98.8439	99.5620	92.4343	684	8	682	3	0	0.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2017	98.7689	99.6382	66.9061	3851	48	3856	14	8	57.1429
ndellapenna-hhga	SNP	ti	map_l125_m2_e0	*	99.2019	98.5888	99.8226	69.6014	29831	427	29831	53	27	50.9434
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.2022	98.8423	99.5649	69.6516	4781	56	4805	21	9	42.8571
cchapple-custom	INDEL	*	*	het	99.2026	98.9188	99.4881	58.0034	192034	2099	238847	1229	782	63.6290
ltrigg-rtg2	SNP	ti	segdup	*	99.2028	99.6980	98.7126	86.7471	19478	59	19475	254	32	12.5984
ghariani-varprowl	SNP	ti	map_l125_m1_e0	homalt	99.2029	98.5967	99.8167	66.5358	10890	155	10890	20	15	75.0000
ndellapenna-hhga	SNP	ti	map_l125_m2_e1	*	99.2034	98.5901	99.8245	69.6481	30138	431	30138	53	27	50.9434
hfeng-pmm1	SNP	ti	map_l100_m0_e0	het	99.2035	98.8772	99.5320	69.1542	13826	157	13823	65	16	24.6154
cchapple-custom	INDEL	I1_5	HG002complexvar	het	99.2036	98.7960	99.6147	56.4110	17970	219	19130	74	62	83.7838
jmaeng-gatk	SNP	tv	func_cds	*	99.2038	99.7941	98.6205	39.0741	4362	9	4361	61	0	0.0000
jli-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2041	99.7097	98.7036	65.3598	17517	51	17512	230	14	6.0870
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.2043	99.1106	99.2981	73.8671	93609	840	93517	661	572	86.5356
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2044	98.8843	99.5266	75.4930	1684	19	1682	8	1	12.5000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2047	98.8739	99.5378	72.9132	1317	15	1292	6	4	66.6667
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2048	98.9185	99.4928	63.7700	1372	15	1373	7	2	28.5714
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.2048	98.4221	100.0000	85.8880	499	8	499	0	0
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2051	98.7842	99.6296	37.6999	11294	139	11296	42	20	47.6190
jli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2054	98.6910	99.7252	56.8874	19602	260	19598	54	35	64.8148
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2054	98.4234	100.0000	72.6469	437	7	433	0	0
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2056	98.5498	99.8702	37.4713	4621	68	4618	6	0	0.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2056	99.6454	98.7698	73.1350	562	2	562	7	7	100.0000
rpoplin-dv42	SNP	ti	map_l125_m0_e0	homalt	99.2059	98.7531	99.6629	68.6730	4435	56	4435	15	14	93.3333
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2060	98.6004	99.8192	50.8699	6622	94	6624	12	3	25.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.2060	99.0415	99.3711	52.8190	310	3	316	2	2	100.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2061	98.9623	99.4512	52.1534	1812	19	1812	10	1	10.0000
hfeng-pmm1	INDEL	D1_5	segdup	het	99.2064	99.2775	99.1354	93.9383	687	5	688	6	0	0.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2066	99.0169	99.3969	52.5864	1813	18	1813	11	2	18.1818
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2066	99.0882	99.3253	55.9755	11193	103	11189	76	58	76.3158
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2067	98.6486	99.7712	68.9410	438	6	436	1	0	0.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2068	99.2630	99.1506	88.9811	1751	13	1751	15	13	86.6667
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2070	100.0000	98.4266	73.0316	564	0	563	9	9	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2070	98.8739	99.5423	76.1072	439	5	435	2	0	0.0000
ckim-vqsr	INDEL	*	map_l100_m2_e0	homalt	99.2070	99.2070	99.2070	85.1821	1251	10	1251	10	5	50.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2072	98.6486	99.7720	62.8458	1314	18	1313	3	0	0.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.2072	98.6486	99.7722	84.5803	438	6	438	1	1	100.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2074	99.1262	99.2888	51.5248	1815	16	1815	13	1	7.6923
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2077	99.0991	99.3166	75.7056	440	4	436	3	0	0.0000
jli-custom	SNP	tv	map_l100_m1_e0	het	99.2078	99.0984	99.3174	64.0498	15278	139	15277	105	24	22.8571

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