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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1486 1487 1488 1489 1490 1491 1492 1493 1494 ... 1720 1721 » 74451-74500 / 86044 show all
bgallagher-sentieon	SNP	ti	map_l150_m2_e1	*	99.1904	99.3389	99.0424	77.0978	20586	137	20582	199	37	18.5930
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1904	98.9484	99.4336	67.7810	3858	41	3862	22	16	72.7273
jlack-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1906	99.8023	98.5863	61.2684	55521	110	55510	796	46	5.7789
gduggal-bwafb	SNP	tv	HG002compoundhet	homalt	99.1913	99.5573	98.8280	47.3709	3373	15	3373	40	33	82.5000
egarrison-hhga	INDEL	D1_5	map_l125_m2_e1	homalt	99.1914	98.9247	99.4595	86.5160	368	4	368	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_l125_m2_e1	homalt	99.1914	98.9247	99.4595	86.3921	368	4	368	2	2	100.0000
egarrison-hhga	SNP	tv	map_l125_m2_e0	het	99.1915	98.6880	99.7001	70.3958	10305	137	10305	31	12	38.7097
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.1916	98.5934	99.7970	32.9401	1472	21	1475	3	3	100.0000
jli-custom	INDEL	D1_5	map_siren	*	99.1919	99.0649	99.3191	79.7902	3496	33	3501	24	8	33.3333
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1930	99.1930	99.1930	76.9218	1352	11	1352	11	7	63.6364
hfeng-pmm2	INDEL	D1_5	map_l150_m2_e1	homalt	99.1935	99.1935	99.1935	86.9679	246	2	246	2	2	100.0000
egarrison-hhga	INDEL	D1_5	map_l100_m2_e1	homalt	99.1935	99.1935	99.1935	83.6066	615	5	615	5	4	80.0000
astatham-gatk	INDEL	D1_5	map_l150_m2_e1	homalt	99.1935	99.1935	99.1935	88.1510	246	2	246	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	map_l150_m2_e1	homalt	99.1935	99.1935	99.1935	88.0424	246	2	246	2	2	100.0000
jli-custom	INDEL	I1_5	map_siren	het	99.1936	98.7507	99.6405	79.0669	1660	21	1663	6	1	16.6667
ltrigg-rtg2	INDEL	D1_5	HG002complexvar	*	99.1938	98.8812	99.5083	54.2253	32349	366	32179	159	100	62.8931
jli-custom	INDEL	I1_5	map_l125_m2_e1	*	99.1939	98.9655	99.4233	85.7143	861	9	862	5	2	40.0000
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.1942	99.4652	98.9247	51.8135	372	2	368	4	3	75.0000
jli-custom	SNP	ti	map_l250_m0_e0	homalt	99.1945	98.8532	99.5381	89.7296	431	5	431	2	2	100.0000
egarrison-hhga	SNP	ti	map_l250_m0_e0	homalt	99.1945	98.8532	99.5381	90.7121	431	5	431	2	2	100.0000
hfeng-pmm3	SNP	ti	map_l125_m0_e0	het	99.1947	99.1407	99.2487	75.9543	8192	71	8190	62	6	9.6774
hfeng-pmm1	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1947	98.5087	99.8903	63.5767	17306	262	17297	19	5	26.3158
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.1948	98.4026	100.0000	35.5649	308	5	308	0	0
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.1948	98.5039	99.8954	68.1029	9547	145	9547	10	9	90.0000
ltrigg-rtg2	SNP	tv	HG002compoundhet	het	99.1949	98.9300	99.4612	50.0484	4623	50	4615	25	5	20.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1951	98.6340	99.7626	72.6726	32782	454	32775	78	58	74.3590
raldana-dualsentieon	SNP	tv	map_l125_m1_e0	*	99.1952	99.2757	99.1147	70.0226	15900	116	15898	142	4	2.8169
ltrigg-rtg2	INDEL	I1_5	segdup	*	99.1958	99.4334	98.9593	93.1346	1053	6	1046	11	3	27.2727
jpowers-varprowl	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.1961	99.9228	98.4799	61.8721	3884	3	3887	60	46	76.6667
hfeng-pmm1	SNP	*	map_l125_m0_e0	*	99.1962	99.0044	99.3888	74.3664	19192	193	19189	118	33	27.9661
hfeng-pmm3	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1963	98.5919	99.8081	71.9245	32768	468	32762	63	44	69.8413
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1964	99.5470	98.8483	74.0177	14505	66	14505	169	12	7.1006
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.1964	99.5470	98.8483	74.0177	14505	66	14505	169	12	7.1006
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.1968	99.5561	98.8400	40.7302	2467	11	2471	29	6	20.6897
astatham-gatk	SNP	*	segdup	*	99.1969	98.5784	99.8232	90.3648	27668	399	27662	49	12	24.4898
jlack-gatk	INDEL	I1_5	*	het	99.1970	99.4952	98.9006	61.6913	78642	399	78625	874	231	26.4302
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1973	98.5845	99.8177	71.4580	63519	912	63531	116	89	76.7241
rpoplin-dv42	SNP	*	HG002complexvar	hetalt	99.1974	99.6774	98.7220	36.2525	309	1	309	4	4	100.0000
rpoplin-dv42	SNP	tv	HG002complexvar	hetalt	99.1974	99.6774	98.7220	36.2525	309	1	309	4	4	100.0000
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.1976	99.0717	99.3238	51.2490	6617	62	6610	45	42	93.3333
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1978	98.9840	99.4125	65.8284	3215	33	3215	19	7	36.8421
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1991	98.6599	99.7442	50.1650	6626	90	6628	17	7	41.1765
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.1992	98.5033	99.9050	39.1794	2106	32	2103	2	1	50.0000
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.1995	98.5500	99.8576	35.6051	2107	31	2104	3	0	0.0000
gduggal-snapvard	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.1995	98.5461	99.8616	38.6640	2169	32	2164	3	2	66.6667
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1996	99.5127	98.8884	74.7272	14500	71	14500	163	14	8.5890
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.1996	99.5127	98.8884	74.7272	14500	71	14500	163	14	8.5890
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2002	98.7477	99.6569	58.1790	3233	41	3195	11	7	63.6364
hfeng-pmm3	SNP	tv	map_l150_m1_e0	het	99.2002	99.1218	99.2788	75.3081	6885	61	6883	50	5	10.0000
astatham-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2005	98.5314	99.8788	66.3539	17310	258	17301	21	11	52.3810

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