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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1476 1477 1478 1479 1480 1481 1482 1483 1484 ... 1720 1721 » 73951-74000 / 86044 show all
rpoplin-dv42	SNP	tv	map_l100_m1_e0	het	99.1180	99.1503	99.0858	64.8238	15286	131	15282	141	59	41.8440
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.1182	98.6758	99.5645	45.6045	6185	83	6173	27	13	48.1481
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.1183	98.3683	99.8798	44.5703	844	14	831	1	0	0.0000
ltrigg-rtg1	SNP	ti	map_l125_m2_e0	*	99.1183	98.4500	99.7957	64.8854	29789	469	29791	61	19	31.1475
ckim-vqsr	SNP	tv	HG002compoundhet	het	99.1184	98.6518	99.5894	55.9836	4610	63	4608	19	12	63.1579
astatham-gatk	INDEL	D16_PLUS	*	homalt	99.1187	99.7045	98.5397	70.8497	1687	5	1687	25	20	80.0000
ckim-vqsr	INDEL	D1_5	map_l150_m1_e0	homalt	99.1189	98.6842	99.5575	88.1053	225	3	225	1	1	100.0000
hfeng-pmm1	INDEL	D1_5	map_l150_m1_e0	homalt	99.1189	98.6842	99.5575	85.6690	225	3	225	1	1	100.0000
jli-custom	INDEL	D1_5	map_l150_m1_e0	homalt	99.1189	98.6842	99.5575	86.5075	225	3	225	1	1	100.0000
ckim-gatk	INDEL	D1_5	map_l150_m1_e0	homalt	99.1189	98.6842	99.5575	88.1053	225	3	225	1	1	100.0000
dgrover-gatk	SNP	ti	map_l250_m2_e1	homalt	99.1191	98.4199	99.8283	86.6233	1744	28	1744	3	2	66.6667
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1194	98.7685	99.4729	66.0097	3208	40	3208	17	8	47.0588
bgallagher-sentieon	SNP	tv	map_l100_m2_e0	het	99.1197	99.5817	98.6621	71.4019	15711	66	15707	213	25	11.7371
gduggal-snapfb	SNP	*	HG002complexvar	*	99.1200	99.6105	98.6343	21.7486	751447	2938	752277	10416	1326	12.7304
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1201	99.2954	98.9455	75.2393	1691	12	1689	18	3	16.6667
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.1202	98.5423	99.7050	56.9250	338	5	338	1	0	0.0000
raldana-dualsentieon	SNP	tv	map_l100_m0_e0	*	99.1204	99.1249	99.1158	68.4908	10987	97	10986	98	4	4.0816
qzeng-custom	SNP	*	HG002complexvar	*	99.1204	98.4430	99.8072	19.9398	742639	11746	723843	1398	631	45.1359
egarrison-hhga	SNP	*	map_l150_m2_e1	het	99.1207	98.5415	99.7068	75.7393	20066	297	20066	59	22	37.2881
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.1207	98.7596	99.4845	63.9164	4777	60	4825	25	19	76.0000
ltrigg-rtg2	INDEL	I1_5	map_l125_m2_e1	homalt	99.1211	98.8338	99.4100	80.8041	339	4	337	2	0	0.0000
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.1213	99.5294	98.7165	50.0292	846	4	846	11	10	90.9091
hfeng-pmm1	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1217	98.3082	99.9487	53.8083	17549	302	17548	9	0	0.0000
bgallagher-sentieon	SNP	*	map_l150_m2_e1	*	99.1218	99.3542	98.8904	77.2353	32002	208	31996	359	62	17.2702
egarrison-hhga	SNP	*	map_l250_m0_e0	homalt	99.1221	98.7281	99.5192	91.2532	621	8	621	3	3	100.0000
ckim-dragen	SNP	ti	map_l250_m2_e1	homalt	99.1226	98.8149	99.4321	83.6687	1751	21	1751	10	9	90.0000
raldana-dualsentieon	INDEL	I1_5	map_l125_m2_e1	homalt	99.1228	98.8338	99.4135	83.7309	339	4	339	2	1	50.0000
ltrigg-rtg1	SNP	*	map_l125_m2_e0	*	99.1232	98.4718	99.7831	64.7024	46009	714	46011	100	28	28.0000
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.1235	99.2295	99.0178	67.7817	13651	106	13609	135	117	86.6667
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.1235	99.2295	99.0178	67.7817	13651	106	13609	135	117	86.6667
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.1238	98.4538	99.8029	79.4946	10634	167	10634	21	12	57.1429
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1238	99.1238	99.1238	89.4268	905	8	905	8	7	87.5000
ndellapenna-hhga	SNP	tv	map_l125_m1_e0	*	99.1238	98.5327	99.7220	67.2834	15781	235	15781	44	22	50.0000
cchapple-custom	SNP	*	map_siren	homalt	99.1241	98.2758	99.9871	48.6990	54205	951	54173	7	7	100.0000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1242	99.2333	99.0153	88.2398	906	7	905	9	6	66.6667
qzeng-custom	INDEL	I1_5	HG002complexvar	homalt	99.1245	98.9887	99.2607	46.5706	13312	136	13292	99	61	61.6162
raldana-dualsentieon	SNP	ti	map_l125_m2_e0	*	99.1246	99.1738	99.0754	71.0207	30008	250	30004	280	11	3.9286
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1246	99.5572	98.6958	41.6434	7419	33	7416	98	0	0.0000
raldana-dualsentieon	SNP	ti	map_l125_m2_e1	*	99.1254	99.1822	99.0686	71.0811	30319	250	30315	285	11	3.8597
ckim-dragen	SNP	tv	map_l250_m1_e0	homalt	99.1254	99.2991	98.9523	83.2944	850	6	850	9	7	77.7778
jlack-gatk	SNP	ti	func_cds	het	99.1254	99.9765	98.2886	33.6861	8502	2	8500	148	1	0.6757
bgallagher-sentieon	SNP	tv	map_l100_m2_e1	het	99.1255	99.5859	98.6693	71.4407	15872	66	15868	214	25	11.6822
hfeng-pmm2	SNP	*	map_l125_m2_e1	het	99.1256	99.2645	98.9871	75.5812	29422	218	29416	301	25	8.3057
ltrigg-rtg1	SNP	ti	map_l125_m2_e1	*	99.1256	98.4625	99.7978	64.9540	30099	470	30102	61	19	31.1475
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	99.1258	98.3867	99.8761	42.1136	3964	65	4032	5	5	100.0000
ckim-dragen	SNP	*	map_l250_m1_e0	homalt	99.1258	98.9850	99.2671	82.5332	2438	25	2438	18	15	83.3333
ckim-dragen	SNP	ti	map_l250_m1_e0	homalt	99.1261	98.8177	99.4364	82.0944	1588	19	1588	9	8	88.8889
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1261	99.3893	98.8642	54.0422	3743	23	3743	43	42	97.6744
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1261	99.3893	98.8642	54.0422	3743	23	3743	43	42	97.6744
ltrigg-rtg1	SNP	ti	segdup	*	99.1266	99.6417	98.6169	87.5468	19467	70	19465	273	31	11.3553

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