PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73901-73950 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.1128 | 99.3482 | 98.8786 | 72.9414 | 30940 | 203 | 30949 | 351 | 41 | 11.6809 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.1128 | 99.3482 | 98.8786 | 72.9414 | 30940 | 203 | 30949 | 351 | 41 | 11.6809 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1130 | 99.2516 | 98.9748 | 72.3987 | 2122 | 16 | 2124 | 22 | 4 | 18.1818 | |
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | homalt | 99.1131 | 98.8610 | 99.3665 | 64.2948 | 8940 | 103 | 8940 | 57 | 38 | 66.6667 | |
| cchapple-custom | SNP | tv | HG002compoundhet | * | 99.1131 | 98.7784 | 99.4501 | 47.4326 | 8814 | 109 | 9224 | 51 | 34 | 66.6667 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | * | 99.1139 | 98.4703 | 99.7659 | 61.6627 | 15771 | 245 | 15771 | 37 | 9 | 24.3243 | |
| ltrigg-rtg1 | INDEL | * | * | het | 99.1142 | 98.5886 | 99.6455 | 55.1307 | 191393 | 2740 | 190584 | 678 | 162 | 23.8938 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1143 | 98.5907 | 99.6435 | 73.6743 | 1679 | 24 | 1677 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | func_cds | het | 99.1144 | 98.9838 | 99.2453 | 45.4845 | 2630 | 27 | 2630 | 20 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | map_l150_m0_e0 | * | 99.1145 | 98.9696 | 99.2598 | 79.4196 | 7780 | 81 | 7778 | 58 | 12 | 20.6897 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1148 | 98.6494 | 99.5846 | 74.0889 | 1680 | 23 | 1678 | 7 | 1 | 14.2857 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1148 | 98.6494 | 99.5846 | 73.9124 | 1680 | 23 | 1678 | 7 | 2 | 28.5714 | |
| astatham-gatk | SNP | tv | segdup | * | 99.1149 | 98.4412 | 99.7979 | 91.5044 | 8399 | 133 | 8395 | 17 | 6 | 35.2941 | |
| astatham-gatk | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 68.0000 | 56 | 1 | 56 | 0 | 0 | ||
| anovak-vg | SNP | * | func_cds | homalt | 99.1150 | 98.8967 | 99.3342 | 20.4124 | 6902 | 77 | 6863 | 46 | 41 | 89.1304 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.3434 | 56 | 1 | 56 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.2387 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 93.4884 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 73.3333 | 56 | 1 | 56 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 86.7690 | 224 | 4 | 224 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 93.7916 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 92.5433 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 72.8155 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 73.3333 | 56 | 1 | 56 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.1150 | 99.9061 | 98.3364 | 68.3163 | 1064 | 1 | 1064 | 18 | 18 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.1150 | 99.1202 | 99.1098 | 84.2670 | 338 | 3 | 334 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 70.8333 | 56 | 1 | 56 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 96.5261 | 56 | 1 | 56 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 99.1150 | 100.0000 | 98.2456 | 80.1394 | 5 | 0 | 56 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.6919 | 56 | 1 | 56 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.6919 | 56 | 1 | 56 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 68.8889 | 56 | 1 | 56 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l100_m0_e0 | het | 99.1151 | 98.5051 | 99.7326 | 69.3594 | 20888 | 317 | 20889 | 56 | 24 | 42.8571 | |
| bgallagher-sentieon | SNP | * | map_l150_m2_e0 | * | 99.1151 | 99.3470 | 98.8842 | 77.1865 | 31644 | 208 | 31638 | 357 | 62 | 17.3669 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.1151 | 98.3983 | 99.8425 | 40.4315 | 8232 | 134 | 8242 | 13 | 12 | 92.3077 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | * | 99.1152 | 98.8890 | 99.3424 | 73.3921 | 19493 | 219 | 19489 | 129 | 91 | 70.5426 | |
| hfeng-pmm1 | SNP | * | map_l150_m2_e1 | het | 99.1153 | 98.7674 | 99.4657 | 76.0302 | 20112 | 251 | 20106 | 108 | 27 | 25.0000 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e0 | het | 99.1156 | 98.7579 | 99.4759 | 76.0299 | 12721 | 160 | 12717 | 67 | 17 | 25.3731 | |
| egarrison-hhga | SNP | * | map_l150_m2_e0 | het | 99.1156 | 98.5298 | 99.7085 | 75.6800 | 19837 | 296 | 19837 | 58 | 22 | 37.9310 | |
| raldana-dualsentieon | SNP | ti | map_l125_m1_e0 | * | 99.1157 | 99.1614 | 99.0701 | 69.2148 | 29089 | 246 | 29085 | 273 | 11 | 4.0293 | |
| jli-custom | SNP | ti | map_l125_m1_e0 | het | 99.1158 | 98.8065 | 99.4270 | 68.8246 | 18048 | 218 | 18046 | 104 | 33 | 31.7308 | |
| gduggal-snapvard | SNP | ti | * | * | 99.1158 | 98.9272 | 99.3052 | 22.3384 | 2063143 | 22374 | 2054412 | 14373 | 2372 | 16.5032 | |
| jlack-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1165 | 99.7497 | 98.4914 | 72.1867 | 30684 | 77 | 30684 | 470 | 460 | 97.8723 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.1168 | 99.0593 | 99.1743 | 78.7979 | 1053 | 10 | 1081 | 9 | 4 | 44.4444 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e1 | het | 99.1170 | 98.7630 | 99.4736 | 76.1158 | 12854 | 161 | 12850 | 68 | 17 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1170 | 98.6103 | 99.6289 | 50.5656 | 1632 | 23 | 1611 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1175 | 98.9995 | 99.2358 | 63.1487 | 5541 | 56 | 5454 | 42 | 17 | 40.4762 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1176 | 98.5286 | 99.7136 | 61.8611 | 1741 | 26 | 1741 | 5 | 5 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.1176 | 98.8270 | 99.4100 | 83.4553 | 337 | 4 | 337 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | SNP | * | map_l125_m2_e0 | het | 99.1177 | 99.2564 | 98.9794 | 75.5476 | 29100 | 218 | 29094 | 300 | 25 | 8.3333 | |