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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1474 1475 1476 1477 1478 1479 1480 1481 1482 ... 1720 1721 » 73851-73900 / 86044 show all
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.1037	98.2234	100.0000	28.2542	1161	21	1163	0	0
jpowers-varprowl	SNP	tv	*	het	99.1037	99.3176	98.8908	29.6901	587657	4038	587824	6593	166	2.5178
astatham-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1039	98.4828	99.7328	68.8838	1493	23	1493	4	1	25.0000
egarrison-hhga	SNP	ti	map_l150_m0_e0	*	99.1041	98.4989	99.7167	79.0350	7743	118	7743	22	10	45.4545
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1042	99.4409	98.7698	49.5614	10672	60	10678	133	13	9.7744
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.1045	98.2249	100.0000	84.7380	498	9	498	0	0
gduggal-bwafb	SNP	ti	map_l100_m2_e0	*	99.1045	99.1095	99.0994	68.4259	48525	436	48527	441	108	24.4898
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.1048	98.5238	99.6927	45.3838	3604	54	3568	11	2	18.1818
egarrison-hhga	SNP	tv	map_l125_m0_e0	*	99.1050	98.5221	99.6948	73.4104	6533	98	6533	20	9	45.0000
jmaeng-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1051	98.6148	99.6003	69.7196	1495	21	1495	6	3	50.0000
rpoplin-dv42	SNP	*	map_l125_m2_e0	het	99.1051	98.9733	99.2372	71.6337	29017	301	29011	223	129	57.8475
asubramanian-gatk	INDEL	I1_5	HG002complexvar	het	99.1051	98.3342	99.8882	58.4164	17886	303	17868	20	13	65.0000
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.1054	98.7352	99.4784	63.8767	13583	174	13541	71	56	78.8732
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.1054	98.7352	99.4784	63.8767	13583	174	13541	71	56	78.8732
jpowers-varprowl	SNP	*	func_cds	het	99.1057	99.2922	98.9199	32.1729	11082	79	11082	121	2	1.6529
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.1057	98.5033	99.7155	36.0522	2106	32	2103	6	2	33.3333
ghariani-varprowl	SNP	*	map_l125_m2_e0	homalt	99.1058	98.5554	99.6624	70.0500	17124	251	17124	58	39	67.2414
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.1063	99.9378	98.2885	58.1479	1608	1	1608	28	18	64.2857
mlin-fermikit	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.1067	98.2534	99.9750	43.4659	3994	71	3992	1	0	0.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.1071	98.3544	99.8715	46.8458	2331	39	2331	3	3	100.0000
dgrover-gatk	SNP	ti	map_l250_m2_e0	homalt	99.1074	98.3991	99.8260	86.5878	1721	28	1721	3	2	66.6667
ltrigg-rtg1	SNP	ti	map_l125_m1_e0	*	99.1074	98.4080	99.8167	62.4199	28868	467	28869	53	19	35.8491
hfeng-pmm1	SNP	tv	map_l150_m2_e0	het	99.1075	98.7728	99.4445	75.8631	7163	89	7161	40	10	25.0000
jli-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1076	98.6776	99.5414	71.9967	93200	1249	93118	429	358	83.4499
ghariani-varprowl	SNP	tv	map_l100_m2_e0	homalt	99.1079	98.8713	99.3457	66.7718	9110	104	9110	60	39	65.0000
hfeng-pmm1	SNP	tv	map_l125_m0_e0	*	99.1084	98.9142	99.3035	75.2093	6559	72	6558	46	13	28.2609
bgallagher-sentieon	SNP	tv	map_l100_m1_e0	het	99.1089	99.5719	98.6501	70.0769	15351	66	15347	210	25	11.9048
ndellapenna-hhga	SNP	ti	map_l100_m2_e1	het	99.1089	98.4335	99.7937	64.2644	30475	485	30477	63	24	38.0952
gduggal-bwafb	SNP	ti	map_l100_m2_e1	*	99.1089	99.1189	99.0989	68.4487	49049	436	49051	446	108	24.2152
anovak-vg	SNP	*	*	homalt	99.1091	98.7819	99.4384	16.6644	1165787	14375	1158439	6543	5522	84.3955
ltrigg-rtg1	SNP	*	map_l125_m1_e0	*	99.1092	98.4292	99.7987	62.1857	44615	712	44616	90	28	31.1111
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.1094	98.3822	99.8474	70.7576	2615	43	2617	4	3	75.0000
raldana-dualsentieon	INDEL	*	*	*	99.1095	98.7566	99.4648	57.7282	340258	4284	340120	1830	1626	88.8525
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1097	99.8684	98.3624	63.9223	8349	11	8349	139	138	99.2806
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1097	99.8684	98.3624	63.9223	8349	11	8349	139	138	99.2806
jmaeng-gatk	INDEL	*	*	*	99.1098	99.0216	99.1981	60.9184	341171	3371	341038	2757	1621	58.7958
ndellapenna-hhga	INDEL	D1_5	*	homalt	99.1101	99.1497	99.0705	58.8372	48510	416	48497	455	260	57.1429
jpowers-varprowl	SNP	*	map_l125_m1_e0	homalt	99.1107	98.5566	99.6710	69.6349	16661	244	16661	55	40	72.7273
ltrigg-rtg2	INDEL	I1_5	map_l125_m0_e0	homalt	99.1110	99.1228	99.0991	78.8571	113	1	110	1	0	0.0000
ghariani-varprowl	SNP	*	map_l125_m2_e1	homalt	99.1110	98.5626	99.6655	70.0625	17280	252	17280	58	39	67.2414
jlack-gatk	SNP	tv	map_l150_m2_e1	homalt	99.1112	98.4519	99.7794	72.2800	4070	64	4070	9	6	66.6667
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.1114	98.9086	99.3151	72.3170	725	8	725	5	5	100.0000
rpoplin-dv42	SNP	*	map_l125_m2_e1	het	99.1114	98.9777	99.2454	71.6791	29337	303	29331	223	129	57.8475
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.1117	98.9729	99.2509	77.5593	1349	14	1325	10	5	50.0000
jli-custom	INDEL	I1_5	map_l100_m2_e0	het	99.1120	98.4868	99.7452	83.3439	781	12	783	2	0	0.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1121	98.7531	99.4737	81.8095	396	5	378	2	1	50.0000
astatham-gatk	SNP	tv	HG002complexvar	*	99.1122	98.2547	99.9847	22.3181	241856	4296	241769	37	21	56.7568
hfeng-pmm1	SNP	tv	map_l150_m2_e1	het	99.1123	98.7752	99.4518	75.8770	7258	90	7256	40	10	25.0000
jlack-gatk	SNP	tv	map_l150_m2_e0	homalt	99.1124	98.4570	99.7766	72.3207	4020	63	4020	9	6	66.6667
hfeng-pmm1	SNP	*	map_l150_m2_e0	het	99.1127	98.7632	99.4646	75.9700	19884	249	19878	107	27	25.2336

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