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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1473 1474 1475 1476 1477 1478 1479 1480 1481 ... 1720 1721 » 73801-73850 / 86044 show all
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.0950	99.1848	99.0054	86.2506	1095	9	1095	11	4	36.3636
hfeng-pmm1	SNP	ti	map_l150_m1_e0	het	99.0951	98.7227	99.4704	74.9167	12212	158	12208	65	17	26.1538
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0953	99.8075	98.3931	40.1515	18148	35	18186	297	10	3.3670
ndellapenna-hhga	SNP	ti	map_l100_m1_e0	het	99.0953	98.4002	99.8002	62.6312	29463	479	29465	59	24	40.6780
asubramanian-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0957	98.9522	99.2395	65.0592	27388	290	27403	210	22	10.4762
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.0959	99.3912	98.8024	75.4321	653	4	660	8	2	25.0000
ckim-vqsr	SNP	*	HG002complexvar	het	99.0965	98.2281	99.9803	19.3098	457249	8248	457124	90	32	35.5556
hfeng-pmm3	INDEL	D1_5	map_l100_m2_e1	*	99.0966	98.9170	99.2769	81.5232	1918	21	1922	14	3	21.4286
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.0967	99.3659	98.8288	86.9442	1097	7	1097	13	4	30.7692
ltrigg-rtg1	INDEL	*	map_l125_m2_e1	homalt	99.0968	99.0956	99.0979	85.1341	767	7	769	7	3	42.8571
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.0969	99.5403	98.6573	40.9208	6713	31	6760	92	1	1.0870
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.0969	99.4760	98.7206	57.2310	6644	35	6636	86	83	96.5116
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.0970	98.4127	99.7908	31.1983	1922	31	1908	4	3	75.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.0973	98.3085	99.8990	63.5493	988	17	989	1	1	100.0000
ghariani-varprowl	SNP	*	*	het	99.0974	99.8581	98.3482	28.2380	1870907	2659	1871294	31430	431	1.3713
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0975	98.5381	99.6632	66.5047	3842	57	3847	13	7	53.8462
hfeng-pmm2	SNP	*	map_l125_m1_e0	het	99.0978	99.2392	98.9567	74.3753	28176	216	28170	297	25	8.4175
qzeng-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0978	99.2811	98.9152	61.5160	27758	201	27902	306	67	21.8954
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.0981	98.2124	100.0000	84.5390	934	17	934	0	0
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0981	99.2004	98.9959	68.2271	13647	110	13606	138	117	84.7826
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0981	99.2004	98.9959	68.2271	13647	110	13606	138	117	84.7826
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0984	99.3619	98.8363	71.4448	3737	24	3737	44	44	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0984	99.3619	98.8363	71.4448	3737	24	3737	44	44	100.0000
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.0988	99.0063	99.1915	87.6655	2690	27	2699	22	15	68.1818
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	99.0990	99.0909	99.1071	90.7970	109	1	111	1	0	0.0000
gduggal-snapplat	SNP	tv	*	homalt	99.0993	98.3541	99.8560	22.6563	370916	6207	370887	535	142	26.5421
hfeng-pmm2	INDEL	*	segdup	*	99.0994	98.9828	99.2163	94.4475	2530	26	2532	20	4	20.0000
asubramanian-gatk	INDEL	I1_5	*	*	99.0996	98.6108	99.5933	59.2515	148571	2093	148648	607	454	74.7941
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1002	98.6070	99.5984	66.0300	991	14	992	4	3	75.0000
hfeng-pmm2	INDEL	*	HG002complexvar	*	99.1003	98.4520	99.7572	57.3339	75747	1191	75614	184	143	77.7174
ghariani-varprowl	SNP	tv	map_l100_m2_e1	homalt	99.1004	98.8820	99.3197	66.7481	9198	104	9198	63	40	63.4921
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.1004	99.3228	98.8789	34.2183	440	3	441	5	5	100.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1009	98.8095	99.3939	76.4286	166	2	164	1	0	0.0000
bgallagher-sentieon	SNP	*	map_l150_m1_e0	*	99.1019	99.3303	98.8746	75.7599	30404	205	30398	346	61	17.6301
ltrigg-rtg1	INDEL	D1_5	HG002complexvar	*	99.1020	98.6275	99.5810	54.4390	32266	449	32088	135	85	62.9630
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.1021	99.2658	98.9390	69.0925	13656	101	13614	146	113	77.3973
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.1021	99.2658	98.9390	69.0925	13656	101	13614	146	113	77.3973
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1022	99.6257	98.5842	64.7104	18098	68	18104	260	243	93.4615
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1022	99.6257	98.5842	64.7104	18098	68	18104	260	243	93.4615
ndellapenna-hhga	SNP	ti	map_l100_m2_e0	het	99.1023	98.4194	99.7947	64.2605	30138	484	30140	62	24	38.7097
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1026	99.7251	98.4878	62.3729	6167	17	6122	94	6	6.3830
gduggal-bwafb	SNP	ti	map_l100_m1_e0	*	99.1029	99.1050	99.1009	66.4175	47502	429	47504	431	106	24.5940
gduggal-bwavard	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.1030	98.2511	99.9699	50.6031	10000	178	9949	3	2	66.6667
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.1030	98.4221	99.7934	73.4358	499	8	483	1	1	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.1031	99.1903	99.0160	51.1670	5635	46	5635	56	56	100.0000
astatham-gatk	INDEL	I1_5	segdup	*	99.1033	99.0557	99.1509	94.5434	1049	10	1051	9	2	22.2222
cchapple-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1034	98.6295	99.5819	70.6519	63548	883	64304	270	244	90.3704
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.1035	98.9086	99.2991	66.9100	4803	53	4817	34	12	35.2941
hfeng-pmm2	SNP	tv	map_l150_m1_e0	*	99.1035	99.2944	98.9134	76.5808	10835	77	10833	119	14	11.7647
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	99.1036	99.3780	98.8308	63.1331	2716	17	2705	32	28	87.5000

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