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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1472 1473 1474 1475 1476 1477 1478 1479 1480 ... 1720 1721 » 73751-73800 / 86044 show all
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.0866	98.7946	99.3804	48.6184	4016	49	4010	25	11	44.0000
ghariani-varprowl	SNP	*	map_l125_m1_e0	homalt	99.0868	98.5271	99.6530	67.5166	16656	249	16656	58	39	67.2414
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.0868	99.0968	99.0767	50.8276	10313	94	10302	96	89	92.7083
cchapple-custom	SNP	tv	map_siren	homalt	99.0870	98.2019	99.9882	51.4688	16930	310	16915	2	2	100.0000
gduggal-snapvard	SNP	*	*	*	99.0871	98.9341	99.2406	23.7872	3022073	32560	3000636	22962	3691	16.0744
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0878	99.0624	99.1133	72.7315	30851	292	30851	276	26	9.4203
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0878	99.0624	99.1133	72.7315	30851	292	30851	276	26	9.4203
hfeng-pmm1	SNP	*	map_l150_m1_e0	het	99.0880	98.7264	99.4522	74.8794	19070	246	19064	105	27	25.7143
ltrigg-rtg1	INDEL	*	map_l150_m0_e0	homalt	99.0881	99.3902	98.7879	89.8148	163	1	163	2	2	100.0000
ckim-vqsr	INDEL	*	map_l150_m0_e0	homalt	99.0881	99.3902	98.7879	91.7376	163	1	163	2	2	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0886	98.9484	99.2292	67.4228	3858	41	3862	30	18	60.0000
gduggal-bwavard	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.0887	98.2753	99.9156	51.4864	5983	105	5919	5	4	80.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.0890	98.6667	99.5150	57.5021	1036	14	1026	5	3	60.0000
raldana-dualsentieon	SNP	*	map_l100_m2_e0	het	99.0893	99.2047	98.9741	68.2725	46030	369	46019	477	7	1.4675
jmaeng-gatk	INDEL	I16_PLUS	HG002complexvar	het	99.0895	98.1955	100.0000	64.9055	653	12	631	0	0
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0896	98.3925	99.7967	32.3556	1469	24	1473	3	3	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.0897	98.4762	99.7110	62.4593	1034	16	1035	3	3	100.0000
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.0897	98.8283	99.3524	77.3626	6579	78	6597	43	9	20.9302
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.0900	99.5359	98.6480	56.8443	6648	31	6640	91	88	96.7033
jli-custom	SNP	*	map_l125_m2_e1	het	99.0901	98.8360	99.3454	70.6523	29295	345	29292	193	54	27.9793
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.0901	99.5957	98.5896	55.8133	6159	25	6291	90	2	2.2222
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.0906	99.0741	99.1071	88.6525	107	1	111	1	0	0.0000
ltrigg-rtg1	INDEL	*	map_l250_m1_e0	homalt	99.0909	100.0000	98.1982	94.0290	109	0	109	2	1	50.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.0909	98.1982	100.0000	84.6695	436	8	436	0	0
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0909	98.7850	99.3987	76.0252	6342	78	6282	38	24	63.1579
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0909	98.7850	99.3987	76.0252	6342	78	6282	38	24	63.1579
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.0909	98.1982	100.0000	84.3053	436	8	436	0	0
egarrison-hhga	SNP	*	map_l150_m1_e0	het	99.0911	98.4883	99.7013	74.4872	19024	292	19024	57	22	38.5965
jlack-gatk	SNP	*	map_l150_m2_e0	homalt	99.0914	98.3503	99.8438	71.6709	11506	193	11506	18	13	72.2222
astatham-gatk	SNP	ti	map_l125_m0_e0	homalt	99.0916	98.3745	99.8192	66.7668	4418	73	4418	8	7	87.5000
raldana-dualsentieon	SNP	*	map_l100_m2_e1	het	99.0916	99.2132	98.9703	68.3138	46529	369	46518	484	7	1.4463
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.0917	98.9651	99.2188	73.5537	765	8	762	6	1	16.6667
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.0919	98.8333	99.3518	73.8158	2965	35	3372	22	17	77.2727
gduggal-snapplat	SNP	ti	HG002complexvar	homalt	99.0919	98.3790	99.8152	19.4474	190328	3136	190130	352	203	57.6705
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.0926	100.0000	98.2014	76.4606	549	0	546	10	1	10.0000
jlack-gatk	SNP	*	map_l150_m2_e1	homalt	99.0927	98.3512	99.8455	71.6669	11632	195	11632	18	13	72.2222
rpoplin-dv42	SNP	*	map_l125_m0_e0	homalt	99.0933	98.5101	99.6834	69.3810	6612	100	6612	21	20	95.2381
bgallagher-sentieon	SNP	ti	map_l125_m2_e1	het	99.0933	99.3608	98.8273	75.6520	18965	122	18961	225	33	14.6667
jli-custom	SNP	tv	map_l150_m2_e1	*	99.0935	98.8437	99.3446	73.0880	11369	133	11368	75	23	30.6667
hfeng-pmm3	SNP	ti	map_l250_m1_e0	*	99.0936	99.0828	99.1044	88.3618	4537	42	4537	41	5	12.1951
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.0937	98.5254	99.6685	47.3225	1804	27	1804	6	0	0.0000
ltrigg-rtg2	INDEL	D6_15	HG002complexvar	homalt	99.0937	98.2036	100.0000	51.0204	1148	21	1104	0	0
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.0937	98.8111	99.3780	84.1286	1496	18	1438	9	0	0.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.0937	99.5146	98.6763	71.9257	820	4	820	11	1	9.0909
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.0943	98.9524	99.2366	62.3968	1039	11	1040	8	7	87.5000
jlack-gatk	SNP	tv	map_l150_m1_e0	homalt	99.0943	98.4288	99.7688	70.0054	3884	62	3884	9	6	66.6667
ltrigg-rtg1	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.0944	98.2843	99.9179	60.1440	1203	21	1217	1	1	100.0000
rpoplin-dv42	INDEL	D1_5	map_siren	*	99.0944	99.1782	99.0107	80.6593	3500	29	3503	35	15	42.8571
rpoplin-dv42	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0945	98.9337	99.2558	72.1244	63744	687	63755	478	442	92.4686
qzeng-custom	SNP	tv	HG002complexvar	*	99.0948	98.4189	99.7800	23.2771	242263	3892	238613	526	243	46.1977

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