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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1469 1470 1471 1472 1473 1474 1475 1476 1477 ... 1720 1721 » 73601-73650 / 86044 show all
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0587	99.3353	98.7837	71.2941	3736	25	3736	46	45	97.8261
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0587	99.3353	98.7837	71.2941	3736	25	3736	46	45	97.8261
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.0588	98.9652	99.1525	77.2688	1052	11	1053	9	3	33.3333
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0590	99.3619	98.7579	70.3448	3737	24	3737	47	47	100.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0590	99.3619	98.7579	70.3448	3737	24	3737	47	47	100.0000
jlack-gatk	INDEL	*	map_siren	homalt	99.0590	99.0207	99.0974	80.4586	2629	26	2635	24	14	58.3333
raldana-dualsentieon	SNP	ti	map_l100_m2_e1	het	99.0592	99.1473	98.9712	67.5574	30696	264	30689	319	6	1.8809
mlin-fermikit	INDEL	D1_5	func_cds	*	99.0596	99.3711	98.7500	26.2673	158	1	158	2	1	50.0000
dgrover-gatk	SNP	ti	map_l250_m1_e0	homalt	99.0596	98.3199	99.8105	85.5645	1580	27	1580	3	2	66.6667
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.0596	99.8095	98.3209	76.9759	524	1	527	9	6	66.6667
ltrigg-rtg1	INDEL	*	map_l100_m1_e0	homalt	99.0600	98.6960	99.4267	80.9576	1211	16	1214	7	4	57.1429
ndellapenna-hhga	INDEL	D1_5	map_l125_m2_e1	homalt	99.0604	99.1935	98.9276	85.4807	369	3	369	4	4	100.0000
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.0605	98.2598	99.8745	43.2288	1581	28	1591	2	2	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0605	98.9572	99.1641	72.4921	949	10	949	8	6	75.0000
ckim-vqsr	SNP	ti	*	homalt	99.0608	98.1423	99.9967	16.3042	788120	14918	788111	26	25	96.1538
ltrigg-rtg1	INDEL	*	func_cds	het	99.0610	98.5981	99.5283	36.1446	211	3	211	1	0	0.0000
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0614	99.8136	98.3203	43.6922	10712	20	10712	183	5	2.7322
asubramanian-gatk	INDEL	D6_15	HG002complexvar	homalt	99.0619	99.3157	98.8095	62.8201	1161	8	1162	14	14	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.0619	99.2481	98.8764	82.8296	264	2	264	3	1	33.3333
raldana-dualsentieon	SNP	*	map_l100_m0_e0	*	99.0621	99.0682	99.0561	67.1734	32535	306	32531	310	12	3.8710
jli-custom	SNP	*	map_l125_m1_e0	het	99.0623	98.7919	99.3341	68.8001	28049	343	28046	188	54	28.7234
dgrover-gatk	INDEL	*	segdup	*	99.0625	99.1784	98.9470	94.7737	2535	21	2537	27	10	37.0370
jli-custom	SNP	tv	map_l150_m1_e0	*	99.0626	98.7812	99.3456	71.0917	10779	133	10778	71	23	32.3944
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.0626	98.7852	99.3416	58.5661	3822	47	3772	25	22	88.0000
rpoplin-dv42	INDEL	D1_5	map_l125_m2_e1	homalt	99.0629	99.4624	98.6667	86.1470	370	2	370	5	5	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0629	98.1432	100.0000	42.5707	1110	21	1117	0	0
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.0631	98.4795	99.6536	52.7550	842	13	863	3	1	33.3333
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.0633	98.4363	99.6983	48.3242	2644	42	2644	8	0	0.0000
ltrigg-rtg1	SNP	ti	*	hetalt	99.0637	99.8282	98.3108	41.4441	581	1	582	10	10	100.0000
cchapple-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.0646	99.1518	98.9776	67.7712	3507	30	3485	36	36	100.0000
hfeng-pmm3	SNP	tv	map_l150_m0_e0	*	99.0651	99.0177	99.1125	80.0536	4133	41	4132	37	3	8.1081
hfeng-pmm2	INDEL	*	map_l150_m2_e0	homalt	99.0654	99.1684	98.9627	88.3152	477	4	477	5	3	60.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.0654	98.1481	100.0000	78.2881	106	2	104	0	0
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.0654	99.2509	98.8806	66.5000	265	2	265	3	3	100.0000
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.0654	98.1481	100.0000	79.5276	106	2	104	0	0
ltrigg-rtg2	INDEL	*	func_cds	het	99.0654	99.0654	99.0654	38.1503	212	2	212	2	0	0.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.0654	98.1481	100.0000	79.0744	106	2	104	0	0
astatham-gatk	INDEL	*	map_l150_m2_e0	homalt	99.0654	99.1684	98.9627	89.4829	477	4	477	5	3	60.0000
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0655	98.4745	99.6636	56.9081	19559	303	19552	66	47	71.2121
ghariani-varprowl	SNP	tv	segdup	homalt	99.0657	99.8456	98.2979	91.0501	3233	5	3234	56	29	51.7857
gduggal-snapfb	SNP	*	map_siren	homalt	99.0661	98.3701	99.7720	60.7462	54257	899	54257	124	41	33.0645
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0661	99.2298	98.9030	75.7127	45350	352	45350	503	38	7.5547
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0661	99.2298	98.9030	75.7127	45350	352	45350	503	38	7.5547
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0674	99.0875	99.0472	37.3044	7384	68	7381	71	0	0.0000
hfeng-pmm3	INDEL	*	map_siren	*	99.0674	98.8394	99.2964	80.1151	7324	86	7339	52	13	25.0000
bgallagher-sentieon	INDEL	D6_15	HG002complexvar	homalt	99.0678	100.0000	98.1528	62.7696	1169	0	1169	22	21	95.4545
anovak-vg	SNP	tv	*	homalt	99.0679	98.8237	99.3132	19.4559	372687	4436	371341	2568	1960	76.3240
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.0685	99.0142	99.1228	89.4371	904	9	904	8	7	87.5000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0685	99.1132	99.0238	69.1438	13635	122	13593	134	112	83.5821
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0685	99.1132	99.0238	69.1438	13635	122	13593	134	112	83.5821

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