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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1468 1469 1470 1471 1472 1473 1474 1475 1476 ... 1720 1721 » 73551-73600 / 86044 show all
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.0488	98.8712	99.2269	57.4163	6657	76	6931	54	10	18.5185
astatham-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.0488	98.3627	99.7446	66.6690	4686	78	4686	12	7	58.3333
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0489	99.3034	98.7958	56.9516	11404	80	11404	139	132	94.9640
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.0491	98.9618	99.1365	81.8417	4194	44	4248	37	15	40.5405
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.0493	99.4792	98.6231	67.7222	573	3	573	8	8	100.0000
gduggal-snapfb	SNP	ti	HG002complexvar	het	99.0494	99.5771	98.5273	20.1517	313435	1331	313897	4692	557	11.8713
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.0496	99.4927	98.6105	40.0631	11375	58	11426	161	2	1.2422
astatham-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0504	98.5724	99.5330	77.2638	1519	22	1492	7	2	28.5714
ckim-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0504	98.6372	99.4670	77.6637	1520	21	1493	8	2	25.0000
raldana-dualsentieon	SNP	ti	map_l100_m1_e0	het	99.0505	99.1317	98.9695	65.9806	29682	260	29675	309	6	1.9418
gduggal-bwavard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.0508	98.2646	99.8497	54.9729	1359	24	1329	2	0	0.0000
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0508	99.8948	98.2209	50.1958	4748	5	4748	86	85	98.8372
hfeng-pmm2	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0510	98.2298	99.8861	53.8211	17535	316	17534	20	1	5.0000
cchapple-custom	SNP	ti	HG002compoundhet	het	99.0513	98.8217	99.2820	39.9079	9393	112	10233	74	60	81.0811
eyeh-varpipe	SNP	ti	map_l100_m1_e0	het	99.0514	99.6226	98.4868	69.7302	29829	113	29158	448	19	4.2411
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.0520	99.8745	98.2429	45.7715	10344	13	10344	185	181	97.8378
hfeng-pmm2	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0524	98.2806	99.8365	59.1178	34810	609	34800	57	5	8.7719
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.0528	98.3446	99.7713	68.4849	2614	44	2617	6	4	66.6667
egarrison-hhga	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.0531	98.7414	99.3667	63.7370	1726	22	1726	11	10	90.9091
ndellapenna-hhga	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.0531	98.7414	99.3667	63.5237	1726	22	1726	11	10	90.9091
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0534	98.1246	100.0000	31.5937	1465	28	1468	0	0
qzeng-custom	INDEL	D1_5	func_cds	*	99.0536	100.0000	98.1250	39.8496	159	0	157	3	0	0.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	99.0536	100.0000	98.1250	68.1909	157	0	157	3	0	0.0000
bgallagher-sentieon	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.0536	98.9058	99.2019	69.0574	2983	33	2983	24	5	20.8333
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	99.0536	100.0000	98.1250	71.7813	157	0	157	3	0	0.0000
hfeng-pmm2	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0538	98.3322	99.7862	63.3791	17275	293	17266	37	4	10.8108
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0544	98.5583	99.5556	65.3417	30694	449	30694	137	9	6.5693
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0544	98.5583	99.5556	65.3417	30694	449	30694	137	9	6.5693
egarrison-hhga	SNP	*	map_l150_m0_e0	*	99.0549	98.4292	99.6886	78.8145	11843	189	11843	37	16	43.2432
cchapple-custom	INDEL	*	segdup	het	99.0552	98.7040	99.4090	95.0259	1447	19	1682	10	3	30.0000
raldana-dualsentieon	SNP	ti	map_l100_m2_e0	het	99.0553	99.1379	98.9728	67.5282	30358	264	30351	315	6	1.9048
gduggal-bwafb	INDEL	D1_5	map_l125_m2_e1	homalt	99.0553	98.6559	99.4580	88.0078	367	5	367	2	2	100.0000
dgrover-gatk	SNP	*	map_l250_m2_e1	homalt	99.0554	98.3812	99.7389	86.6637	2674	44	2674	7	5	71.4286
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.0555	98.1287	100.0000	47.6606	839	16	839	0	0
ltrigg-rtg1	INDEL	D1_5	func_cds	*	99.0556	98.7421	99.3711	31.1688	157	2	158	1	0	0.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.0560	98.6830	99.4318	77.2512	1049	14	1050	6	2	33.3333
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.0561	98.7981	99.3154	40.3094	4028	49	4062	28	17	60.7143
qzeng-custom	SNP	*	HG002complexvar	het	99.0563	98.3261	99.7975	19.7489	457708	7792	449025	911	250	27.4424
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0563	99.8206	98.3037	63.5993	8345	15	8345	144	142	98.6111
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0563	99.8206	98.3037	63.5993	8345	15	8345	144	142	98.6111
gduggal-bwafb	SNP	ti	map_siren	het	99.0568	99.3219	98.7930	59.4400	61959	423	61963	757	131	17.3052
jlack-gatk	SNP	tv	map_l100_m0_e0	homalt	99.0571	98.3359	99.7889	62.7592	3782	64	3782	8	5	62.5000
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0572	98.8725	99.2426	41.5382	10611	121	10614	81	2	2.4691
jlack-gatk	SNP	ti	map_l150_m1_e0	homalt	99.0574	98.2530	99.8751	68.9978	7199	128	7199	9	7	77.7778
dgrover-gatk	SNP	tv	map_l150_m2_e1	*	99.0574	99.1393	98.9756	78.7166	11403	99	11401	118	24	20.3390
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.0579	98.3957	99.7290	58.9087	368	6	368	1	0	0.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0580	99.2555	98.8612	71.4717	3733	28	3733	43	43	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0580	99.2555	98.8612	71.4717	3733	28	3733	43	43	100.0000
jli-custom	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.0580	99.3700	98.7479	70.2830	2997	19	2997	38	7	18.4211
mlin-fermikit	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.0584	100.0000	98.1343	71.2755	525	0	526	10	10	100.0000

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