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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1465 1466 1467 1468 1469 1470 1471 1472 1473 ... 1720 1721 » 73401-73450 / 86044 show all
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.0282	99.8648	98.2055	45.9010	10343	14	10343	189	184	97.3545
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.0283	99.8745	98.1963	46.0818	10344	13	10344	190	184	96.8421
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.0291	98.0769	100.0000	64.9682	51	1	55	0	0
ltrigg-rtg1	SNP	tv	func_cds	het	99.0291	99.8118	98.2586	27.7763	2652	5	2652	47	0	0.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.0291	98.0769	100.0000	72.5275	51	1	50	0	0
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.0291	98.0769	100.0000	73.0769	51	1	49	0	0
ltrigg-rtg1	INDEL	D1_5	segdup	hetalt	99.0291	98.0769	100.0000	96.0426	51	1	52	0	0
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0291	99.3506	98.7097	63.5580	459	3	459	6	6	100.0000
bgallagher-sentieon	INDEL	D1_5	segdup	hetalt	99.0291	98.0769	100.0000	95.2425	51	1	52	0	0
astatham-gatk	INDEL	D1_5	segdup	hetalt	99.0291	98.0769	100.0000	95.5631	51	1	52	0	0
asubramanian-gatk	INDEL	D1_5	segdup	hetalt	99.0291	98.0769	100.0000	95.6266	51	1	52	0	0
ghariani-varprowl	SNP	tv	func_cds	het	99.0291	99.8118	98.2586	43.0471	2652	5	2652	47	0	0.0000
hfeng-pmm1	INDEL	D1_5	segdup	hetalt	99.0291	98.0769	100.0000	95.6007	51	1	52	0	0
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.0291	98.0769	100.0000	59.6899	51	1	52	0	0
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.0291	98.0769	100.0000	83.2143	51	1	47	0	0
jli-custom	INDEL	D1_5	map_l100_m0_e0	homalt	99.0291	98.8372	99.2218	82.5526	255	3	255	2	2	100.0000
jli-custom	INDEL	D1_5	segdup	hetalt	99.0291	98.0769	100.0000	95.5932	51	1	52	0	0
dgrover-gatk	INDEL	D1_5	map_l100_m0_e0	homalt	99.0291	98.8372	99.2218	84.4337	255	3	255	2	2	100.0000
dgrover-gatk	INDEL	D1_5	segdup	hetalt	99.0291	98.0769	100.0000	95.6155	51	1	52	0	0
raldana-dualsentieon	INDEL	D1_5	segdup	hetalt	99.0291	98.0769	100.0000	94.9219	51	1	52	0	0
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0301	99.8948	98.1803	50.4508	4748	5	4748	88	87	98.8636
gduggal-bwafb	SNP	*	map_l100_m2_e0	*	99.0302	99.1280	98.9327	69.1496	73319	645	73321	791	163	20.6068
rpoplin-dv42	INDEL	*	map_l125_m2_e1	homalt	99.0304	98.9664	99.0944	86.2407	766	8	766	7	6	85.7143
ndellapenna-hhga	SNP	tv	map_l100_m1_e0	het	99.0304	98.3784	99.6911	62.9947	15167	250	15167	47	17	36.1702
ghariani-varprowl	SNP	ti	map_l150_m2_e1	homalt	99.0304	98.2452	99.8283	73.7883	7558	135	7558	13	10	76.9231
asubramanian-gatk	SNP	ti	*	*	99.0306	98.1234	99.9548	19.2315	2046375	39136	2046316	926	90	9.7192
dgrover-gatk	SNP	ti	map_l150_m1_e0	het	99.0308	99.1431	98.9188	80.0370	12264	106	12260	134	29	21.6418
ndellapenna-hhga	SNP	*	map_l100_m0_e0	*	99.0308	98.3192	99.7529	65.5554	32289	552	32290	80	41	51.2500
raldana-dualsentieon	SNP	ti	map_l100_m0_e0	*	99.0308	99.0400	99.0217	66.4551	21562	209	21559	213	9	4.2254
ckim-gatk	INDEL	D16_PLUS	*	homalt	99.0314	99.7045	98.3673	70.9863	1687	5	1687	28	22	78.5714
ckim-vqsr	INDEL	D16_PLUS	*	homalt	99.0314	99.7045	98.3673	70.9863	1687	5	1687	28	22	78.5714
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0316	99.5706	98.4983	37.0609	7420	32	7412	113	2	1.7699
jlack-gatk	INDEL	D1_5	*	*	99.0320	99.1134	98.9507	60.1218	145444	1301	145502	1543	552	35.7745
jlack-gatk	SNP	*	HG002complexvar	hetalt	99.0323	99.0323	99.0323	39.5712	307	3	307	3	3	100.0000
jlack-gatk	SNP	tv	HG002complexvar	hetalt	99.0323	99.0323	99.0323	39.5712	307	3	307	3	3	100.0000
gduggal-bwafb	SNP	ti	map_l250_m2_e1	homalt	99.0324	98.1941	99.8852	88.8818	1740	32	1740	2	2	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0327	99.8086	98.2688	63.7648	8344	16	8344	147	145	98.6395
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0327	99.8086	98.2688	63.7648	8344	16	8344	147	145	98.6395
rpoplin-dv42	SNP	ti	map_l100_m0_e0	het	99.0327	98.8486	99.2174	68.2957	13822	161	13819	109	66	60.5505
ckim-vqsr	INDEL	D1_5	map_l100_m0_e0	homalt	99.0329	99.2248	98.8417	84.1880	256	2	256	3	2	66.6667
ckim-gatk	INDEL	D1_5	map_l100_m0_e0	homalt	99.0329	99.2248	98.8417	84.1880	256	2	256	3	2	66.6667
eyeh-varpipe	SNP	ti	map_l100_m2_e0	het	99.0330	99.6245	98.4486	71.1792	30507	115	29825	470	19	4.0426
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.0330	98.6660	99.4027	68.8043	1997	27	1997	12	2	16.6667
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0333	99.7835	98.2942	63.8675	461	1	461	8	8	100.0000
egarrison-hhga	INDEL	I1_5	map_siren	*	99.0333	98.8686	99.1987	80.5885	2971	34	2971	24	6	25.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0336	98.8971	99.1705	63.1579	1076	12	1076	9	4	44.4444
hfeng-pmm1	SNP	ti	map_l250_m2_e1	*	99.0337	98.9362	99.1315	88.6771	5022	54	5022	44	10	22.7273
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.0338	98.2985	99.7802	60.1845	10919	189	10893	24	6	25.0000
ltrigg-rtg1	INDEL	I1_5	map_l100_m0_e0	homalt	99.0338	100.0000	98.0861	79.6693	208	0	205	4	2	50.0000
ndellapenna-hhga	SNP	tv	map_l100_m2_e1	het	99.0340	98.4126	99.6632	64.7264	15685	253	15685	53	17	32.0755

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