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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1462 1463 1464 1465 1466 1467 1468 1469 1470 ... 1720 1721 » 73251-73300 / 86044 show all
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.0047	98.3051	99.7143	69.9828	348	6	349	1	1	100.0000
rpoplin-dv42	SNP	tv	map_l125_m2_e1	het	99.0048	98.9955	99.0141	71.4321	10447	106	10445	104	55	52.8846
ltrigg-rtg1	INDEL	*	map_l100_m2_e0	homalt	99.0050	98.5726	99.4413	82.1306	1243	18	1246	7	4	57.1429
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.0050	99.5000	98.5149	61.3027	199	1	199	3	3	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.0050	99.5000	98.5149	62.6617	199	1	199	3	3	100.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0051	98.4010	99.6166	36.8952	4677	76	4677	18	17	94.4444
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0051	99.4671	98.5473	71.4531	28559	153	28559	421	23	5.4632
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0051	99.4671	98.5473	71.4531	28559	153	28559	421	23	5.4632
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0051	98.0989	99.9282	41.2255	5573	108	5569	4	4	100.0000
gduggal-bwafb	SNP	*	map_l250_m2_e0	homalt	99.0054	98.2130	99.8108	88.9664	2638	48	2638	5	5	100.0000
mlin-fermikit	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.0055	98.0306	100.0000	65.5504	896	18	895	0	0
ltrigg-rtg1	INDEL	D6_15	HG002complexvar	homalt	99.0057	98.1180	99.9096	52.1005	1147	22	1105	1	0	0.0000
ndellapenna-hhga	SNP	*	map_l150_m1_e0	*	99.0061	98.2783	99.7447	72.1099	30082	527	30082	77	40	51.9481
hfeng-pmm3	INDEL	D1_5	map_l100_m2_e0	het	99.0064	99.0446	98.9683	81.1940	1244	12	1247	13	2	15.3846
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.0067	98.2249	99.8012	86.1050	498	9	502	1	1	100.0000
hfeng-pmm2	SNP	*	map_l100_m0_e0	het	99.0069	99.2124	98.8022	73.2241	21038	167	21034	255	23	9.0196
mlin-fermikit	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.0073	98.6439	99.3734	43.8166	6183	85	6185	39	38	97.4359
bgallagher-sentieon	SNP	*	map_l125_m2_e0	het	99.0076	99.3826	98.6355	75.8378	29137	181	29131	403	55	13.6476
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0078	98.8530	99.1632	72.8794	948	11	948	8	6	75.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.0079	98.5876	99.4318	70.3953	349	5	350	2	1	50.0000
ckim-vqsr	INDEL	I1_5	segdup	*	99.0079	98.8669	99.1493	95.7156	1047	12	1049	9	2	22.2222
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.0083	98.1431	99.8888	50.8470	1797	34	1797	2	0	0.0000
astatham-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0091	98.3346	99.6930	62.0890	1299	22	1299	4	3	75.0000
hfeng-pmm2	SNP	*	map_l125_m0_e0	*	99.0092	99.2468	98.7728	76.6565	19239	146	19236	239	30	12.5523
hfeng-pmm3	INDEL	D1_5	map_l100_m1_e0	het	99.0096	99.0902	98.9292	80.5480	1198	11	1201	13	2	15.3846
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0097	98.4465	99.5795	70.5535	44992	710	44993	190	10	5.2632
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0097	98.4465	99.5795	70.5535	44992	710	44993	190	10	5.2632
hfeng-pmm3	INDEL	D6_15	segdup	homalt	99.0099	100.0000	98.0392	91.6938	50	0	50	1	1	100.0000
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.0099	98.0392	100.0000	24.2857	50	1	53	0	0
ckim-dragen	INDEL	I16_PLUS	HG002complexvar	het	99.0099	98.3459	99.6830	64.2493	654	11	629	2	1	50.0000
ckim-gatk	INDEL	I1_5	map_l150_m2_e0	homalt	99.0099	99.5025	98.5222	88.8462	200	1	200	3	2	66.6667
cchapple-custom	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.0099	100.0000	98.0392	80.3846	49	0	50	1	1	100.0000
gduggal-bwafb	INDEL	I1_5	map_l150_m2_e0	homalt	99.0099	99.5025	98.5222	89.2706	200	1	200	3	1	33.3333
dgrover-gatk	INDEL	*	map_l100_m2_e0	homalt	99.0099	99.1277	98.8924	84.9649	1250	11	1250	14	6	42.8571
dgrover-gatk	INDEL	I1_5	map_l150_m2_e0	homalt	99.0099	99.5025	98.5222	88.5634	200	1	200	3	2	66.6667
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.0099	100.0000	98.0392	81.6547	52	0	50	1	0	0.0000
ndellapenna-hhga	INDEL	I1_5	map_l150_m2_e0	homalt	99.0099	99.5025	98.5222	88.8031	200	1	200	3	1	33.3333
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.0099	98.0392	100.0000	32.8947	50	1	51	0	0
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.0099	98.0392	100.0000	32.0000	50	1	51	0	0
ltrigg-rtg2	SNP	ti	map_l125_m2_e0	*	99.0101	98.1724	99.8622	61.4718	29705	553	29707	41	10	24.3902
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.0102	98.4000	99.6280	74.9024	2952	48	2946	11	3	27.2727
eyeh-varpipe	SNP	ti	map_l125_m0_e0	*	99.0106	99.6082	98.4201	77.7397	12712	50	12521	201	11	5.4726
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.0110	98.7939	99.2291	68.2739	901	11	901	7	5	71.4286
qzeng-custom	INDEL	D1_5	HG002complexvar	homalt	99.0114	98.8205	99.2030	52.6484	10473	125	10456	84	62	73.8095
mlin-fermikit	SNP	ti	*	homalt	99.0118	99.0588	98.9648	15.5441	795481	7558	795502	8321	8052	96.7672
ltrigg-rtg2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0121	98.4584	99.5720	70.6731	92993	1456	93299	401	200	49.8753
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0126	98.2938	99.7419	42.5046	3111	54	3091	8	8	100.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0126	98.9729	99.0524	59.2954	19658	204	19651	188	96	51.0638
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.0127	98.2067	99.8321	79.0112	4162	76	4162	7	4	57.1429
gduggal-bwafb	SNP	tv	map_l150_m0_e0	homalt	99.0129	98.1928	99.8469	80.0489	1304	24	1304	2	2	100.0000

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