PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72851-72900 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | map_l150_m2_e0 | * | 98.9377 | 98.9908 | 98.8846 | 75.4120 | 20305 | 207 | 20301 | 229 | 9 | 3.9301 | |
| asubramanian-gatk | SNP | * | * | * | 98.9379 | 97.9985 | 99.8954 | 21.0150 | 2993480 | 61139 | 2993343 | 3133 | 150 | 4.7877 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9380 | 99.2225 | 98.6552 | 35.2022 | 3956 | 31 | 3888 | 53 | 17 | 32.0755 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9381 | 97.9340 | 99.9631 | 55.1737 | 10855 | 229 | 10848 | 4 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | func_cds | het | 98.9383 | 99.9624 | 97.9351 | 42.1131 | 2656 | 1 | 2656 | 56 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | * | 98.9384 | 98.2221 | 99.6652 | 71.6791 | 10718 | 194 | 10718 | 36 | 17 | 47.2222 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9385 | 99.9175 | 97.9784 | 62.3961 | 3635 | 3 | 3635 | 75 | 73 | 97.3333 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9385 | 99.9175 | 97.9784 | 62.3961 | 3635 | 3 | 3635 | 75 | 73 | 97.3333 | |
| ltrigg-rtg1 | SNP | * | map_l150_m2_e1 | * | 98.9386 | 98.1062 | 99.7853 | 68.9443 | 31600 | 610 | 31606 | 68 | 22 | 32.3529 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9388 | 98.5705 | 99.3099 | 68.9036 | 3103 | 45 | 3166 | 22 | 16 | 72.7273 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9393 | 99.8565 | 98.0388 | 61.8965 | 8348 | 12 | 8348 | 167 | 166 | 99.4012 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9393 | 99.8565 | 98.0388 | 61.8965 | 8348 | 12 | 8348 | 167 | 166 | 99.4012 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9394 | 98.6710 | 99.2092 | 50.5195 | 3638 | 49 | 3638 | 29 | 26 | 89.6552 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9397 | 98.7667 | 99.1133 | 38.6843 | 11292 | 141 | 11289 | 101 | 1 | 0.9901 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | homalt | 98.9405 | 98.9405 | 98.9405 | 82.3199 | 1214 | 13 | 1214 | 13 | 8 | 61.5385 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | * | 98.9405 | 99.4800 | 98.4068 | 90.5464 | 7844 | 41 | 7659 | 124 | 12 | 9.6774 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9409 | 98.7725 | 99.1098 | 44.1885 | 3621 | 45 | 3674 | 33 | 32 | 96.9697 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e0 | homalt | 98.9410 | 98.2306 | 99.6618 | 76.3825 | 11492 | 207 | 11492 | 39 | 26 | 66.6667 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9411 | 98.0952 | 99.8016 | 65.5738 | 515 | 10 | 503 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e0 | * | 98.9412 | 98.9035 | 98.9788 | 84.3278 | 1353 | 15 | 1357 | 14 | 4 | 28.5714 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9413 | 99.8121 | 98.0856 | 65.0500 | 27626 | 52 | 27616 | 539 | 26 | 4.8238 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9414 | 98.3852 | 99.5039 | 60.3844 | 8225 | 135 | 8224 | 41 | 36 | 87.8049 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9414 | 98.3852 | 99.5039 | 60.3844 | 8225 | 135 | 8224 | 41 | 36 | 87.8049 | |
| hfeng-pmm2 | SNP | * | map_l150_m2_e0 | het | 98.9416 | 99.1556 | 98.7286 | 79.5932 | 19963 | 170 | 19957 | 257 | 23 | 8.9494 | |
| dgrover-gatk | INDEL | * | map_siren | * | 98.9418 | 98.9474 | 98.9362 | 83.4662 | 7332 | 78 | 7347 | 79 | 18 | 22.7848 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.9423 | 99.0599 | 98.8249 | 87.6792 | 843 | 8 | 841 | 10 | 8 | 80.0000 | |
| gduggal-bwafb | INDEL | D1_5 | * | homalt | 98.9426 | 99.3562 | 98.5324 | 61.7935 | 48611 | 315 | 48609 | 724 | 697 | 96.2707 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.9427 | 98.5704 | 99.3179 | 69.3175 | 2620 | 38 | 2621 | 18 | 14 | 77.7778 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e0 | homalt | 98.9427 | 98.1651 | 99.7326 | 81.6352 | 749 | 14 | 746 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9428 | 98.4681 | 99.4221 | 74.5651 | 63444 | 987 | 63485 | 369 | 305 | 82.6558 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.9429 | 98.0986 | 99.8019 | 70.2570 | 44833 | 869 | 44833 | 89 | 30 | 33.7079 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.9429 | 98.0986 | 99.8019 | 70.2570 | 44833 | 869 | 44833 | 89 | 30 | 33.7079 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.9430 | 98.1340 | 99.7654 | 46.0565 | 3734 | 71 | 3828 | 9 | 9 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.9430 | 98.7588 | 99.1279 | 78.7129 | 2387 | 30 | 2387 | 21 | 17 | 80.9524 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | homalt | 98.9435 | 98.3702 | 99.5236 | 74.2304 | 2716 | 45 | 2716 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.9443 | 98.1905 | 99.7099 | 59.8758 | 1031 | 19 | 1031 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.9445 | 98.1905 | 99.7101 | 62.5272 | 1031 | 19 | 1032 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.9445 | 98.1905 | 99.7101 | 62.6893 | 1031 | 19 | 1032 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | SNP | * | HG002compoundhet | hetalt | 98.9449 | 97.9118 | 100.0000 | 22.9224 | 844 | 18 | 844 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | HG002compoundhet | hetalt | 98.9449 | 97.9118 | 100.0000 | 22.9224 | 844 | 18 | 844 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | homalt | 98.9449 | 99.2958 | 98.5965 | 86.3047 | 282 | 2 | 281 | 4 | 2 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | * | het | 98.9455 | 98.8239 | 99.0674 | 60.2345 | 9915 | 118 | 9879 | 93 | 52 | 55.9140 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.9456 | 99.0809 | 98.8106 | 83.8505 | 1078 | 10 | 1080 | 13 | 3 | 23.0769 | |
| ghariani-varprowl | SNP | tv | HG002complexvar | * | 98.9457 | 99.5507 | 98.3479 | 26.3760 | 245046 | 1106 | 245266 | 4120 | 790 | 19.1748 | |
| dgrover-gatk | SNP | * | map_l150_m1_e0 | het | 98.9459 | 99.1510 | 98.7416 | 80.1493 | 19152 | 164 | 19146 | 244 | 49 | 20.0820 | |
| ckim-vqsr | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9460 | 98.5791 | 99.3156 | 73.7970 | 93107 | 1342 | 93014 | 641 | 576 | 89.8596 | |
| eyeh-varpipe | SNP | ti | map_l125_m1_e0 | het | 98.9460 | 99.5456 | 98.3535 | 75.5124 | 18183 | 83 | 17801 | 298 | 15 | 5.0336 | |
| jlack-gatk | SNP | tv | HG002compoundhet | het | 98.9462 | 99.4650 | 98.4329 | 56.5753 | 4648 | 25 | 4648 | 74 | 14 | 18.9189 | |
| bgallagher-sentieon | INDEL | * | segdup | * | 98.9462 | 99.1393 | 98.7539 | 94.5996 | 2534 | 22 | 2536 | 32 | 11 | 34.3750 | |
| ckim-dragen | SNP | tv | map_siren | * | 98.9465 | 99.4753 | 98.4233 | 61.5086 | 45689 | 241 | 45694 | 732 | 69 | 9.4262 | |