PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71801-71850 / 86044 show all | |||||||||||||||
| jli-custom | SNP | tv | map_siren | hetalt | 98.7654 | 98.7654 | 98.7654 | 71.5789 | 80 | 1 | 80 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e0 | * | 98.7654 | 97.5610 | 100.0000 | 88.0734 | 80 | 2 | 78 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.7654 | 97.5610 | 100.0000 | 91.7355 | 40 | 1 | 40 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 71.2230 | 40 | 1 | 40 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.7654 | 97.5610 | 100.0000 | 91.8699 | 40 | 1 | 40 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 71.2230 | 40 | 1 | 40 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | tech_badpromoters | homalt | 98.7654 | 100.0000 | 97.5610 | 49.3827 | 80 | 0 | 80 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7654 | 97.5610 | 100.0000 | 37.6838 | 320 | 8 | 339 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | homalt | 98.7655 | 97.7504 | 99.8019 | 73.3170 | 4041 | 93 | 4031 | 8 | 6 | 75.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7656 | 98.4611 | 99.0719 | 67.7717 | 3839 | 60 | 3843 | 36 | 22 | 61.1111 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e0 | het | 98.7657 | 99.5031 | 98.0391 | 80.4407 | 12817 | 64 | 12549 | 251 | 11 | 4.3825 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7659 | 98.1114 | 99.4293 | 42.4615 | 4000 | 77 | 4007 | 23 | 16 | 69.5652 | |
| mlin-fermikit | SNP | tv | * | * | 98.7665 | 98.1308 | 99.4104 | 19.3147 | 951572 | 18126 | 951506 | 5643 | 4116 | 72.9399 | |
| ltrigg-rtg1 | INDEL | I6_15 | * | homalt | 98.7666 | 98.4933 | 99.0414 | 43.6510 | 6145 | 94 | 6096 | 59 | 52 | 88.1356 | |
| jlack-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.7667 | 98.9130 | 98.6207 | 68.3258 | 2002 | 22 | 2002 | 28 | 5 | 17.8571 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | * | 98.7667 | 98.2059 | 99.3340 | 95.0336 | 1040 | 19 | 1044 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | * | map_siren | * | 98.7669 | 98.3131 | 99.2250 | 80.4107 | 7285 | 125 | 7298 | 57 | 12 | 21.0526 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7673 | 99.3559 | 98.1857 | 45.9987 | 7404 | 48 | 7414 | 137 | 23 | 16.7883 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | * | 98.7675 | 98.5691 | 98.9667 | 80.4011 | 2962 | 43 | 2969 | 31 | 18 | 58.0645 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7680 | 100.0000 | 97.5659 | 60.0486 | 481 | 0 | 481 | 12 | 8 | 66.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.7685 | 97.5669 | 100.0000 | 70.8696 | 401 | 10 | 402 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | homalt | 98.7688 | 98.6339 | 98.9041 | 86.6472 | 722 | 10 | 722 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.7692 | 97.9625 | 99.5893 | 34.5018 | 24040 | 500 | 24005 | 99 | 66 | 66.6667 | |
| jlack-gatk | INDEL | * | map_l100_m2_e0 | homalt | 98.7694 | 98.6519 | 98.8871 | 83.9295 | 1244 | 17 | 1244 | 14 | 6 | 42.8571 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.7696 | 99.0826 | 98.4586 | 84.5167 | 324 | 3 | 511 | 8 | 7 | 87.5000 | |
| ghariani-varprowl | SNP | tv | HG002complexvar | het | 98.7696 | 99.5137 | 98.0366 | 26.9661 | 149998 | 733 | 150145 | 3007 | 54 | 1.7958 | |
| bgallagher-sentieon | INDEL | D16_PLUS | * | homalt | 98.7698 | 99.6454 | 97.9094 | 70.3716 | 1686 | 6 | 1686 | 36 | 27 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e0 | * | 98.7701 | 97.6843 | 99.8804 | 65.6662 | 20037 | 475 | 20041 | 24 | 7 | 29.1667 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7701 | 99.9578 | 97.6102 | 56.2071 | 2369 | 1 | 2369 | 58 | 57 | 98.2759 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.7701 | 97.5701 | 100.0000 | 73.5650 | 522 | 13 | 525 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7701 | 99.9578 | 97.6102 | 56.2071 | 2369 | 1 | 2369 | 58 | 57 | 98.2759 | |
| hfeng-pmm1 | SNP | ti | map_l250_m2_e1 | het | 98.7703 | 98.6056 | 98.9355 | 89.0938 | 3253 | 46 | 3253 | 35 | 8 | 22.8571 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7705 | 99.7193 | 97.8396 | 67.4095 | 18115 | 51 | 18115 | 400 | 388 | 97.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7705 | 99.7193 | 97.8396 | 67.4095 | 18115 | 51 | 18115 | 400 | 388 | 97.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7706 | 100.0000 | 97.5710 | 56.1473 | 2370 | 0 | 2370 | 59 | 59 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7706 | 100.0000 | 97.5710 | 56.3208 | 2370 | 0 | 2370 | 59 | 59 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7709 | 99.7523 | 97.8086 | 67.6045 | 18121 | 45 | 18121 | 406 | 388 | 95.5665 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7709 | 99.7523 | 97.8086 | 67.6045 | 18121 | 45 | 18121 | 406 | 388 | 95.5665 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e1 | homalt | 98.7709 | 97.9675 | 99.5876 | 84.9098 | 482 | 10 | 483 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7710 | 98.6981 | 98.8439 | 73.8011 | 1592 | 21 | 1539 | 18 | 13 | 72.2222 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e1 | homalt | 98.7711 | 98.1858 | 99.3635 | 77.7044 | 4059 | 75 | 4059 | 26 | 16 | 61.5385 | |
| astatham-gatk | INDEL | I16_PLUS | HG002complexvar | * | 98.7711 | 98.2429 | 99.3050 | 67.4541 | 1286 | 23 | 1286 | 9 | 9 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7719 | 98.5989 | 98.9455 | 64.4153 | 563 | 8 | 563 | 6 | 6 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.7719 | 97.7431 | 99.8227 | 66.2275 | 563 | 13 | 563 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m1_e0 | het | 98.7719 | 98.1982 | 99.3523 | 82.2488 | 763 | 14 | 767 | 5 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7720 | 98.3536 | 99.1941 | 45.0969 | 4540 | 76 | 4554 | 37 | 1 | 2.7027 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | het | 98.7722 | 99.0909 | 98.4556 | 84.6291 | 763 | 7 | 765 | 12 | 2 | 16.6667 | |
| hfeng-pmm1 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7723 | 97.8448 | 99.7176 | 64.7729 | 3178 | 70 | 3178 | 9 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | map_l150_m0_e0 | het | 98.7730 | 97.9203 | 99.6406 | 81.1953 | 4991 | 106 | 4991 | 18 | 6 | 33.3333 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.7732 | 98.8531 | 98.6935 | 66.7872 | 1810 | 21 | 1813 | 24 | 0 | 0.0000 | |