PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71451-71500 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.0864 | 38 | 1 | 38 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 86.7946 | 114 | 0 | 114 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | homalt | 98.7013 | 98.7013 | 98.7013 | 88.1081 | 456 | 6 | 456 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7013 | 98.9583 | 98.4456 | 43.0678 | 190 | 2 | 190 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7013 | 97.4359 | 100.0000 | 91.4607 | 38 | 1 | 38 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | tech_badpromoters | het | 98.7013 | 98.7013 | 98.7013 | 42.1053 | 76 | 1 | 76 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | tech_badpromoters | homalt | 98.7013 | 97.4359 | 100.0000 | 55.2941 | 38 | 1 | 38 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 84.7059 | 114 | 0 | 114 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 84.2530 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7013 | 100.0000 | 97.4359 | 78.8043 | 37 | 0 | 38 | 1 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | tech_badpromoters | homalt | 98.7013 | 97.4359 | 100.0000 | 53.0864 | 38 | 1 | 38 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 83.1412 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 83.9945 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 84.0816 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | * | tech_badpromoters | * | 98.7013 | 100.0000 | 97.4359 | 53.2934 | 76 | 0 | 76 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.4478 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.1523 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 51.5789 | 38 | 1 | 46 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 52.5000 | 38 | 1 | 38 | 0 | 0 | ||
| astatham-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.6585 | 38 | 1 | 38 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.6585 | 38 | 1 | 38 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.6585 | 38 | 1 | 38 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m2_e1 | homalt | 98.7013 | 98.2759 | 99.1304 | 95.7549 | 114 | 2 | 114 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.0864 | 38 | 1 | 38 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7013 | 97.4359 | 100.0000 | 91.2644 | 38 | 1 | 38 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.7016 | 98.6472 | 98.7561 | 82.9460 | 1823 | 25 | 1826 | 23 | 9 | 39.1304 | |
| rpoplin-dv42 | SNP | * | map_l250_m2_e1 | homalt | 98.7018 | 97.9029 | 99.5138 | 87.8305 | 2661 | 57 | 2661 | 13 | 13 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7020 | 98.3471 | 99.0596 | 62.1590 | 952 | 16 | 948 | 9 | 4 | 44.4444 | |
| mlin-fermikit | SNP | tv | * | het | 98.7020 | 97.6537 | 99.7731 | 18.7114 | 577821 | 13883 | 577760 | 1314 | 14 | 1.0655 | |
| egarrison-hhga | SNP | tv | HG002compoundhet | * | 98.7023 | 98.0164 | 99.3979 | 47.2112 | 8746 | 177 | 8749 | 53 | 39 | 73.5849 | |
| cchapple-custom | SNP | ti | map_l100_m2_e0 | homalt | 98.7027 | 97.4493 | 99.9888 | 57.8553 | 17842 | 467 | 17837 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7030 | 98.3471 | 99.0615 | 63.1437 | 952 | 16 | 950 | 9 | 8 | 88.8889 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 98.7031 | 98.8959 | 98.5110 | 85.7047 | 1254 | 14 | 1257 | 19 | 3 | 15.7895 | |
| astatham-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.7032 | 97.7767 | 99.6475 | 68.5461 | 1979 | 45 | 1979 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7043 | 98.0318 | 99.3860 | 61.8783 | 1295 | 26 | 1295 | 8 | 6 | 75.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m0_e0 | het | 98.7044 | 98.8116 | 98.5974 | 70.4890 | 20953 | 252 | 20949 | 298 | 3 | 1.0067 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e1 | het | 98.7046 | 99.0277 | 98.3837 | 71.3332 | 46442 | 456 | 46444 | 763 | 144 | 18.8729 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e1 | homalt | 98.7047 | 98.4496 | 98.9610 | 85.2744 | 762 | 12 | 762 | 8 | 3 | 37.5000 | |
| dgrover-gatk | SNP | * | map_l125_m0_e0 | het | 98.7051 | 99.0287 | 98.3836 | 80.4812 | 12541 | 123 | 12538 | 206 | 40 | 19.4175 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.7057 | 99.2433 | 98.1739 | 67.8653 | 35151 | 268 | 35268 | 656 | 60 | 9.1463 | |
| gduggal-bwafb | SNP | * | map_l100_m0_e0 | * | 98.7063 | 98.7333 | 98.6792 | 70.9309 | 32425 | 416 | 32426 | 434 | 107 | 24.6544 | |
| ltrigg-rtg1 | SNP | * | map_l125_m1_e0 | het | 98.7065 | 97.7001 | 99.7339 | 59.7345 | 27739 | 653 | 27739 | 74 | 12 | 16.2162 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.7070 | 97.8532 | 99.5759 | 69.9799 | 5971 | 131 | 11741 | 50 | 42 | 84.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7075 | 98.2437 | 99.1757 | 52.7025 | 2685 | 48 | 2647 | 22 | 8 | 36.3636 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.7075 | 99.0801 | 98.3378 | 83.1572 | 1831 | 17 | 1834 | 31 | 4 | 12.9032 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7076 | 97.8383 | 99.5925 | 68.2618 | 1222 | 27 | 1222 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7076 | 97.8383 | 99.5925 | 68.2618 | 1222 | 27 | 1222 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7080 | 99.4792 | 97.9487 | 44.6023 | 191 | 1 | 191 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7080 | 99.9112 | 97.5335 | 63.5201 | 2250 | 2 | 2254 | 57 | 32 | 56.1404 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7080 | 98.4536 | 98.9637 | 75.6774 | 382 | 6 | 382 | 4 | 1 | 25.0000 | |