PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70901-70950 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | * | 98.6004 | 99.0118 | 98.1924 | 70.8832 | 48996 | 489 | 48998 | 902 | 186 | 20.6208 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | het | 98.6006 | 98.9899 | 98.2143 | 79.8047 | 2254 | 23 | 2255 | 41 | 14 | 34.1463 | |
| ltrigg-rtg1 | INDEL | * | segdup | * | 98.6010 | 97.9264 | 99.2849 | 92.9892 | 2503 | 53 | 2499 | 18 | 5 | 27.7778 | |
| jlack-gatk | SNP | ti | map_l250_m2_e1 | homalt | 98.6012 | 97.4605 | 99.7689 | 86.8645 | 1727 | 45 | 1727 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6014 | 99.4125 | 97.8035 | 88.8214 | 846 | 5 | 846 | 19 | 8 | 42.1053 | |
| astatham-gatk | INDEL | * | map_l125_m0_e0 | homalt | 98.6014 | 99.2958 | 97.9167 | 88.3589 | 282 | 2 | 282 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | homalt | 98.6014 | 99.2958 | 97.9167 | 88.2112 | 282 | 2 | 282 | 6 | 4 | 66.6667 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.6015 | 99.7463 | 97.4826 | 44.5639 | 11404 | 29 | 11462 | 296 | 9 | 3.0405 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e1 | homalt | 98.6017 | 97.3521 | 99.8837 | 62.7989 | 27060 | 736 | 26631 | 31 | 25 | 80.6452 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e0 | * | 98.6017 | 98.2670 | 98.9388 | 83.3913 | 3629 | 64 | 3636 | 39 | 9 | 23.0769 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 98.6027 | 98.6877 | 98.5179 | 88.1508 | 1128 | 15 | 1130 | 17 | 4 | 23.5294 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6028 | 97.4359 | 99.7980 | 86.4421 | 494 | 13 | 494 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | * | segdup | * | 98.6033 | 97.9585 | 99.2566 | 93.9219 | 27494 | 573 | 27505 | 206 | 20 | 9.7087 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6034 | 98.8995 | 98.3091 | 54.0884 | 6021 | 67 | 6221 | 107 | 43 | 40.1869 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | homalt | 98.6039 | 98.1997 | 99.0115 | 87.1860 | 600 | 11 | 601 | 6 | 4 | 66.6667 | |
| ckim-gatk | SNP | ti | segdup | het | 98.6041 | 99.5428 | 97.6830 | 94.4043 | 11975 | 55 | 11973 | 284 | 5 | 1.7606 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | * | 98.6051 | 98.0033 | 99.2142 | 76.9745 | 2945 | 60 | 2904 | 23 | 1 | 4.3478 | |
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.6054 | 97.3613 | 99.8818 | 50.3445 | 19666 | 533 | 19436 | 23 | 17 | 73.9130 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | het | 98.6061 | 97.7557 | 99.4715 | 72.8336 | 2657 | 61 | 2635 | 14 | 3 | 21.4286 | |
| gduggal-snapvard | SNP | ti | segdup | homalt | 98.6062 | 97.6815 | 99.5484 | 88.2591 | 7331 | 174 | 7275 | 33 | 32 | 96.9697 | |
| ghariani-varprowl | SNP | ti | map_l100_m1_e0 | * | 98.6066 | 98.9944 | 98.2219 | 68.9891 | 47449 | 482 | 47451 | 859 | 183 | 21.3038 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6069 | 99.7147 | 97.5235 | 50.6371 | 2796 | 8 | 2796 | 71 | 71 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e1 | * | 98.6071 | 98.3196 | 98.8962 | 88.3190 | 2867 | 49 | 2867 | 32 | 7 | 21.8750 | |
| gduggal-bwafb | INDEL | I1_5 | func_cds | * | 98.6072 | 98.3333 | 98.8827 | 35.1449 | 177 | 3 | 177 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.6077 | 98.1214 | 99.0988 | 41.2220 | 24079 | 461 | 24081 | 219 | 210 | 95.8904 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.6079 | 98.0723 | 99.1495 | 84.7395 | 814 | 16 | 816 | 7 | 2 | 28.5714 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | * | 98.6080 | 98.4427 | 98.7737 | 78.9854 | 4109 | 65 | 4108 | 51 | 2 | 3.9216 | |
| jlack-gatk | SNP | ti | map_l150_m0_e0 | homalt | 98.6081 | 97.5009 | 99.7406 | 73.6452 | 2692 | 69 | 2692 | 7 | 6 | 85.7143 | |
| ckim-dragen | SNP | ti | map_siren | het | 98.6081 | 99.5319 | 97.7013 | 60.9808 | 62090 | 292 | 62097 | 1461 | 137 | 9.3771 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e0 | het | 98.6087 | 99.2624 | 97.9636 | 91.2085 | 3230 | 24 | 3175 | 66 | 4 | 6.0606 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6091 | 98.6593 | 98.5590 | 59.0674 | 7285 | 99 | 7250 | 106 | 103 | 97.1698 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_siren | het | 98.6092 | 98.3751 | 98.8444 | 74.6336 | 2240 | 37 | 2224 | 26 | 1 | 3.8462 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | het | 98.6093 | 97.5384 | 99.7040 | 42.5144 | 13829 | 349 | 13809 | 41 | 9 | 21.9512 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.6094 | 97.8593 | 99.3711 | 81.7451 | 320 | 7 | 316 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6105 | 97.2591 | 100.0000 | 41.6754 | 1100 | 31 | 1107 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6105 | 97.8651 | 99.3674 | 66.4258 | 19161 | 418 | 19162 | 122 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6105 | 97.8651 | 99.3674 | 66.4258 | 19161 | 418 | 19162 | 122 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6109 | 97.4679 | 99.7809 | 46.9392 | 2733 | 71 | 2733 | 6 | 6 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6109 | 99.4340 | 97.8014 | 61.3838 | 3865 | 22 | 3870 | 87 | 83 | 95.4023 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6111 | 97.2603 | 100.0000 | 89.8281 | 71 | 2 | 71 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | tech_badpromoters | * | 98.6111 | 98.6111 | 98.6111 | 48.9362 | 71 | 1 | 71 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | HG002complexvar | homalt | 98.6111 | 98.2699 | 98.9547 | 72.7704 | 284 | 5 | 284 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6111 | 97.2603 | 100.0000 | 88.1956 | 71 | 2 | 70 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6111 | 99.4746 | 97.7625 | 67.1751 | 568 | 3 | 568 | 13 | 13 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6111 | 97.2603 | 100.0000 | 90.0421 | 71 | 2 | 71 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | tech_badpromoters | * | 98.6111 | 98.6111 | 98.6111 | 50.0000 | 71 | 1 | 71 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | * | hetalt | 98.6111 | 97.8186 | 99.4166 | 53.8999 | 852 | 19 | 852 | 5 | 4 | 80.0000 | |
| ckim-gatk | SNP | tv | * | hetalt | 98.6111 | 97.8186 | 99.4166 | 53.8999 | 852 | 19 | 852 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6112 | 97.5894 | 99.6546 | 48.0405 | 7206 | 178 | 7214 | 25 | 15 | 60.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6119 | 99.1025 | 98.1262 | 58.8223 | 3975 | 36 | 3980 | 76 | 19 | 25.0000 | |