PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70851-70900 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5915 | 97.2222 | 100.0000 | 78.0851 | 105 | 3 | 103 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | het | 98.5915 | 98.7763 | 98.4075 | 76.8439 | 6861 | 85 | 6859 | 111 | 1 | 0.9009 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.6450 | 35 | 1 | 35 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5915 | 99.5935 | 97.6096 | 62.3406 | 490 | 2 | 490 | 12 | 11 | 91.6667 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.6450 | 35 | 1 | 35 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5915 | 100.0000 | 97.2222 | 85.6000 | 35 | 0 | 35 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 98.5915 | 97.2222 | 100.0000 | 88.4868 | 35 | 1 | 35 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.3939 | 35 | 1 | 35 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.3617 | 35 | 1 | 35 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 87.6761 | 35 | 1 | 35 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 87.6325 | 35 | 1 | 35 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l150_m1_e0 | homalt | 98.5915 | 98.4848 | 98.6985 | 88.1613 | 455 | 7 | 455 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 86.7925 | 35 | 1 | 35 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 86.7925 | 35 | 1 | 35 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 81.5642 | 35 | 1 | 33 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 85.4626 | 35 | 1 | 33 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.5522 | 35 | 1 | 35 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5915 | 97.2222 | 100.0000 | 80.9259 | 105 | 3 | 103 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5915 | 100.0000 | 97.2222 | 85.6574 | 35 | 0 | 35 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | het | 98.5917 | 99.2114 | 97.9798 | 84.8890 | 1258 | 10 | 1261 | 26 | 4 | 15.3846 | |
| bgallagher-sentieon | SNP | tv | map_l150_m1_e0 | het | 98.5918 | 99.3090 | 97.8850 | 78.8267 | 6898 | 48 | 6896 | 149 | 20 | 13.4228 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5918 | 98.4368 | 98.7473 | 52.7193 | 36020 | 572 | 35944 | 456 | 425 | 93.2018 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.5924 | 99.6528 | 97.5543 | 73.9929 | 1435 | 5 | 1436 | 36 | 3 | 8.3333 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.5925 | 98.0163 | 99.1755 | 86.0408 | 840 | 17 | 842 | 7 | 2 | 28.5714 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.5930 | 99.2105 | 97.9830 | 63.7025 | 8294 | 66 | 8307 | 171 | 160 | 93.5673 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.5930 | 99.2105 | 97.9830 | 63.7025 | 8294 | 66 | 8307 | 171 | 160 | 93.5673 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.5935 | 97.6182 | 99.5885 | 50.6933 | 2910 | 71 | 2904 | 12 | 8 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5939 | 97.9738 | 99.2218 | 68.0216 | 3820 | 79 | 3825 | 30 | 15 | 50.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | * | 98.5942 | 99.6616 | 97.5494 | 78.9029 | 32101 | 109 | 31168 | 783 | 30 | 3.8314 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.5950 | 99.6678 | 97.5451 | 34.2663 | 5100 | 17 | 5086 | 128 | 121 | 94.5312 | |
| ckim-vqsr | SNP | ti | segdup | homalt | 98.5954 | 97.2685 | 99.9589 | 88.0169 | 7300 | 205 | 7300 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e0 | * | 98.5956 | 99.0053 | 98.1892 | 70.8668 | 48474 | 487 | 48476 | 894 | 185 | 20.6935 | |
| egarrison-hhga | INDEL | D1_5 | HG002complexvar | homalt | 98.5958 | 99.1036 | 98.0931 | 56.9237 | 10503 | 95 | 10494 | 204 | 148 | 72.5490 | |
| rpoplin-dv42 | INDEL | * | func_cds | het | 98.5959 | 98.1308 | 99.0654 | 47.2906 | 210 | 4 | 212 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | func_cds | het | 98.5959 | 98.1308 | 99.0654 | 45.9596 | 210 | 4 | 212 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | func_cds | het | 98.5959 | 98.1308 | 99.0654 | 61.0909 | 210 | 4 | 212 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | * | 98.5962 | 98.9919 | 98.2036 | 86.2287 | 491 | 5 | 492 | 9 | 2 | 22.2222 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.5965 | 99.6454 | 97.5694 | 72.5584 | 562 | 2 | 562 | 14 | 13 | 92.8571 | |
| jli-custom | INDEL | * | map_l125_m0_e0 | homalt | 98.5965 | 98.9437 | 98.2517 | 86.9644 | 281 | 3 | 281 | 5 | 4 | 80.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | homalt | 98.5965 | 98.9437 | 98.2517 | 86.4967 | 281 | 3 | 281 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | * | map_l125_m1_e0 | * | 98.5968 | 98.3389 | 98.8561 | 85.7695 | 2072 | 35 | 2074 | 24 | 8 | 33.3333 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5976 | 97.4414 | 99.7817 | 85.6785 | 457 | 12 | 457 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5976 | 99.8224 | 97.4026 | 57.6846 | 2248 | 4 | 2250 | 60 | 49 | 81.6667 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e0 | het | 98.5978 | 98.7179 | 98.4780 | 75.9201 | 18634 | 242 | 18634 | 288 | 78 | 27.0833 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | * | 98.5982 | 98.2428 | 98.9561 | 83.4763 | 3690 | 66 | 3697 | 39 | 9 | 23.0769 | |
| ckim-isaac | INDEL | I1_5 | func_cds | * | 98.5994 | 97.7778 | 99.4350 | 29.7619 | 176 | 4 | 176 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5995 | 98.7927 | 98.4071 | 74.5792 | 30112 | 368 | 29653 | 480 | 385 | 80.2083 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5995 | 98.7927 | 98.4071 | 74.5792 | 30112 | 368 | 29653 | 480 | 385 | 80.2083 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6000 | 97.2387 | 100.0000 | 79.3163 | 493 | 14 | 478 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6004 | 98.3998 | 98.8017 | 51.3514 | 3628 | 59 | 3628 | 44 | 28 | 63.6364 | |