PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70351-70400 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 87.3294 | 65 | 2 | 65 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4848 | 97.5000 | 99.4898 | 65.3710 | 195 | 5 | 195 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4853 | 98.2646 | 98.7069 | 72.8496 | 906 | 16 | 916 | 12 | 1 | 8.3333 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.4855 | 98.1673 | 98.8057 | 79.9095 | 6535 | 122 | 6536 | 79 | 33 | 41.7722 | |
| ckim-isaac | SNP | ti | * | homalt | 98.4855 | 97.0214 | 99.9944 | 13.4256 | 779120 | 23919 | 779153 | 44 | 32 | 72.7273 | |
| gduggal-bwafb | INDEL | D1_5 | HG002complexvar | homalt | 98.4856 | 98.5186 | 98.4525 | 57.9745 | 10441 | 157 | 10434 | 164 | 151 | 92.0732 | |
| gduggal-bwavard | SNP | * | map_l100_m0_e0 | homalt | 98.4857 | 97.1945 | 99.8116 | 63.6530 | 11294 | 326 | 11127 | 21 | 16 | 76.1905 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.4857 | 97.5614 | 99.4277 | 64.2143 | 17723 | 443 | 17720 | 102 | 87 | 85.2941 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.4857 | 97.5614 | 99.4277 | 64.2143 | 17723 | 443 | 17720 | 102 | 87 | 85.2941 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | het | 98.4858 | 98.2735 | 98.6990 | 79.8611 | 5009 | 88 | 5007 | 66 | 44 | 66.6667 | |
| ckim-isaac | SNP | tv | * | het | 98.4858 | 97.0571 | 99.9572 | 19.2906 | 574291 | 17413 | 574576 | 246 | 32 | 13.0081 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4861 | 97.9849 | 98.9924 | 89.4091 | 778 | 16 | 786 | 8 | 7 | 87.5000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e0 | het | 98.4864 | 98.1891 | 98.7854 | 87.7084 | 488 | 9 | 488 | 6 | 1 | 16.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | het | 98.4865 | 98.5946 | 98.3786 | 78.7325 | 2245 | 32 | 2245 | 37 | 15 | 40.5405 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.4868 | 99.3209 | 97.6667 | 72.1900 | 1170 | 8 | 1172 | 28 | 28 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.4869 | 97.9518 | 99.0279 | 85.4026 | 813 | 17 | 815 | 8 | 3 | 37.5000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.4871 | 99.6937 | 97.3094 | 71.3122 | 651 | 2 | 651 | 18 | 17 | 94.4444 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | homalt | 98.4879 | 98.2070 | 98.7705 | 81.8398 | 1205 | 22 | 1205 | 15 | 10 | 66.6667 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | het | 98.4883 | 99.3731 | 97.6190 | 91.2048 | 5231 | 33 | 5084 | 124 | 8 | 6.4516 | |
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | * | 98.4884 | 99.1375 | 97.8477 | 81.2755 | 4138 | 36 | 4137 | 91 | 10 | 10.9890 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | * | 98.4887 | 97.3006 | 99.7063 | 64.1567 | 6452 | 179 | 6450 | 19 | 4 | 21.0526 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e0 | het | 98.4890 | 98.6958 | 98.2832 | 77.8632 | 12713 | 168 | 12709 | 222 | 3 | 1.3514 | |
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 89.0921 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 91.1359 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| astatham-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 91.2703 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e1 | het | 98.4895 | 98.7092 | 98.2707 | 77.9738 | 12847 | 168 | 12843 | 226 | 3 | 1.3274 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.4896 | 97.3839 | 99.6207 | 39.3186 | 23898 | 642 | 23900 | 91 | 86 | 94.5055 | |
| jli-custom | INDEL | * | map_l100_m1_e0 | * | 98.4897 | 98.1595 | 98.8222 | 83.0077 | 3520 | 66 | 3524 | 42 | 15 | 35.7143 | |
| rpoplin-dv42 | SNP | tv | map_l125_m0_e0 | * | 98.4900 | 98.3713 | 98.6090 | 73.3113 | 6523 | 108 | 6522 | 92 | 52 | 56.5217 | |
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 98.4902 | 98.7603 | 98.2216 | 85.1332 | 717 | 9 | 718 | 13 | 3 | 23.0769 | |
| bgallagher-sentieon | SNP | * | map_l250_m2_e1 | * | 98.4903 | 98.8356 | 98.1475 | 89.5400 | 7894 | 93 | 7894 | 149 | 32 | 21.4765 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4903 | 97.8659 | 99.1228 | 38.1555 | 321 | 7 | 339 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e0 | het | 98.4904 | 97.2440 | 99.7691 | 66.6179 | 12526 | 355 | 12529 | 29 | 5 | 17.2414 | |
| gduggal-bwaplat | SNP | ti | segdup | het | 98.4906 | 98.1463 | 98.8374 | 94.7165 | 11807 | 223 | 11817 | 139 | 6 | 4.3166 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.4907 | 97.7292 | 99.2642 | 69.7423 | 28060 | 652 | 28060 | 208 | 16 | 7.6923 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.4907 | 97.7292 | 99.2642 | 69.7423 | 28060 | 652 | 28060 | 208 | 16 | 7.6923 | |
| eyeh-varpipe | SNP | ti | map_l250_m1_e0 | het | 98.4913 | 99.1914 | 97.8011 | 90.9985 | 2944 | 24 | 2891 | 65 | 4 | 6.1539 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4914 | 100.0000 | 97.0276 | 71.0154 | 914 | 0 | 914 | 28 | 1 | 3.5714 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002complexvar | het | 98.4917 | 97.0701 | 99.9556 | 58.8257 | 2286 | 69 | 2250 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4919 | 99.8244 | 97.1944 | 47.1301 | 3980 | 7 | 3984 | 115 | 58 | 50.4348 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.4925 | 98.2456 | 98.7406 | 65.8641 | 392 | 7 | 392 | 5 | 4 | 80.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4925 | 98.9899 | 98.0000 | 87.0718 | 196 | 2 | 196 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4925 | 98.9899 | 98.0000 | 87.7301 | 196 | 2 | 196 | 4 | 1 | 25.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4930 | 98.3051 | 98.6817 | 90.9679 | 522 | 9 | 524 | 7 | 2 | 28.5714 | |
| rpoplin-dv42 | SNP | ti | map_l250_m0_e0 | homalt | 98.4936 | 97.4771 | 99.5316 | 91.1005 | 425 | 11 | 425 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_siren | het | 98.4945 | 97.9148 | 99.0811 | 80.4769 | 4414 | 94 | 4421 | 41 | 3 | 7.3171 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.4945 | 99.5196 | 97.4902 | 74.7924 | 1243 | 6 | 1243 | 32 | 23 | 71.8750 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.4945 | 99.5196 | 97.4902 | 74.7924 | 1243 | 6 | 1243 | 32 | 23 | 71.8750 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.4946 | 98.2087 | 98.7822 | 76.6731 | 6305 | 115 | 6246 | 77 | 38 | 49.3506 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.4946 | 98.2087 | 98.7822 | 76.6731 | 6305 | 115 | 6246 | 77 | 38 | 49.3506 | |