PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70201-70250 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4581 | 99.2238 | 97.7041 | 73.3786 | 767 | 6 | 766 | 18 | 3 | 16.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 98.4582 | 98.2659 | 98.6513 | 90.9250 | 510 | 9 | 512 | 7 | 2 | 28.5714 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.4583 | 97.2091 | 99.7401 | 57.5217 | 17659 | 507 | 17653 | 46 | 39 | 84.7826 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.4583 | 97.2091 | 99.7401 | 57.5217 | 17659 | 507 | 17653 | 46 | 39 | 84.7826 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4586 | 97.3913 | 99.5495 | 58.8889 | 224 | 6 | 221 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.4586 | 99.0170 | 97.9065 | 84.2545 | 2619 | 26 | 2619 | 56 | 14 | 25.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.4591 | 98.7277 | 98.1920 | 68.0700 | 3492 | 45 | 16727 | 308 | 247 | 80.1948 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002complexvar | * | 98.4592 | 97.6318 | 99.3007 | 66.7785 | 1278 | 31 | 1278 | 9 | 8 | 88.8889 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.4594 | 98.2392 | 98.6806 | 75.0087 | 1339 | 24 | 1421 | 19 | 5 | 26.3158 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4599 | 98.5626 | 98.3573 | 64.0590 | 480 | 7 | 479 | 8 | 7 | 87.5000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | * | 98.4604 | 99.3080 | 97.6271 | 89.5723 | 287 | 2 | 288 | 7 | 1 | 14.2857 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | het | 98.4607 | 98.2650 | 98.6572 | 83.2006 | 1246 | 22 | 1249 | 17 | 4 | 23.5294 | |
| ciseli-custom | SNP | tv | * | homalt | 98.4608 | 99.4400 | 97.5007 | 22.4395 | 375011 | 2112 | 373610 | 9577 | 3591 | 37.4961 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.4610 | 97.3722 | 99.5745 | 76.8854 | 8893 | 240 | 8893 | 38 | 10 | 26.3158 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.4610 | 97.3722 | 99.5745 | 76.8854 | 8893 | 240 | 8893 | 38 | 10 | 26.3158 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | * | 98.4611 | 98.4989 | 98.4234 | 78.1788 | 7743 | 118 | 7741 | 124 | 5 | 4.0323 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4615 | 98.4615 | 98.4615 | 84.9188 | 64 | 1 | 64 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 48.3871 | 32 | 1 | 32 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | tech_badpromoters | homalt | 98.4615 | 96.9697 | 100.0000 | 60.9756 | 32 | 1 | 32 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | tech_badpromoters | homalt | 98.4615 | 96.9697 | 100.0000 | 60.4938 | 32 | 1 | 32 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.8502 | 32 | 1 | 32 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.9371 | 32 | 1 | 32 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.1840 | 32 | 1 | 32 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 55.5556 | 32 | 1 | 32 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.6121 | 32 | 1 | 32 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.7106 | 32 | 1 | 32 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.9687 | 32 | 1 | 32 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 56.1644 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.4615 | 96.9697 | 100.0000 | 62.9213 | 32 | 1 | 33 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.0411 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.0312 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.2141 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-gatk | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.4615 | 100.0000 | 96.9697 | 88.5017 | 66 | 0 | 64 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | homalt | 98.4615 | 99.4819 | 97.4619 | 93.6122 | 192 | 1 | 192 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 42.8571 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 86.9919 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.3212 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.6121 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 41.8182 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 85.9649 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 87.5486 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 87.8788 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | homalt | 98.4615 | 99.4819 | 97.4619 | 93.5494 | 192 | 1 | 192 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 40.7407 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.4615 | 96.9697 | 100.0000 | 80.1527 | 128 | 4 | 130 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.0411 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.0312 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.2141 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||