PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69851-69900 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | tv | map_l125_m1_e0 | * | 98.3749 | 99.0322 | 97.7263 | 73.5955 | 15861 | 155 | 15860 | 369 | 38 | 10.2981 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.3750 | 99.1428 | 97.6190 | 80.4477 | 6824 | 59 | 6847 | 167 | 2 | 1.1976 | |
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | het | 98.3750 | 98.3640 | 98.3860 | 76.8948 | 4329 | 72 | 4328 | 71 | 1 | 1.4085 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.3756 | 97.0003 | 99.7905 | 79.9603 | 10477 | 324 | 10478 | 22 | 4 | 18.1818 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3759 | 97.4713 | 99.2974 | 66.0032 | 424 | 11 | 424 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.3762 | 97.2826 | 99.4947 | 68.4722 | 1969 | 55 | 1969 | 10 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | segdup | homalt | 98.3768 | 97.4676 | 99.3031 | 90.1749 | 3156 | 82 | 3135 | 22 | 21 | 95.4545 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3774 | 99.7197 | 97.0708 | 30.6893 | 1423 | 4 | 1425 | 43 | 41 | 95.3488 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | het | 98.3776 | 97.9495 | 98.8095 | 82.0257 | 1242 | 26 | 1245 | 15 | 3 | 20.0000 | |
| ckim-gatk | INDEL | I6_15 | HG002complexvar | homalt | 98.3779 | 99.9176 | 96.8850 | 55.5556 | 1213 | 1 | 1213 | 39 | 39 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.3782 | 98.4839 | 98.2727 | 72.8894 | 21567 | 332 | 21563 | 379 | 204 | 53.8259 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | het | 98.3792 | 97.5547 | 99.2177 | 83.0610 | 758 | 19 | 761 | 6 | 4 | 66.6667 | |
| jli-custom | SNP | ti | map_l250_m2_e1 | * | 98.3796 | 97.4783 | 99.2976 | 86.9545 | 4948 | 128 | 4948 | 35 | 18 | 51.4286 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.3798 | 96.8112 | 100.0000 | 33.4921 | 759 | 25 | 838 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.3801 | 97.1609 | 99.6303 | 75.8203 | 6468 | 189 | 6468 | 24 | 4 | 16.6667 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | het | 98.3805 | 97.1421 | 99.6509 | 65.0308 | 7138 | 210 | 7136 | 25 | 4 | 16.0000 | |
| ckim-isaac | SNP | * | * | homalt | 98.3805 | 96.8182 | 99.9940 | 14.4545 | 1142612 | 37550 | 1142668 | 69 | 50 | 72.4638 | |
| gduggal-bwafb | INDEL | I1_5 | HG002complexvar | homalt | 98.3809 | 97.8212 | 98.9471 | 49.0711 | 13155 | 293 | 13156 | 140 | 134 | 95.7143 | |
| gduggal-bwavard | SNP | ti | map_l100_m0_e0 | homalt | 98.3810 | 96.9900 | 99.8126 | 63.0879 | 7540 | 234 | 7457 | 14 | 11 | 78.5714 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | * | 98.3812 | 97.9211 | 98.8456 | 82.2966 | 1366 | 29 | 1370 | 16 | 2 | 12.5000 | |
| mlin-fermikit | SNP | ti | HG002complexvar | homalt | 98.3813 | 98.4958 | 98.2669 | 18.8239 | 190554 | 2910 | 190572 | 3361 | 3261 | 97.0247 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3820 | 97.9096 | 98.8590 | 53.4408 | 5480 | 117 | 13083 | 151 | 132 | 87.4172 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | het | 98.3825 | 97.6543 | 99.1217 | 84.6554 | 791 | 19 | 790 | 7 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | het | 98.3826 | 97.7867 | 98.9858 | 86.3018 | 486 | 11 | 488 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | * | 98.3828 | 98.2715 | 98.4943 | 79.4152 | 3468 | 61 | 3467 | 53 | 28 | 52.8302 | |
| qzeng-custom | SNP | tv | segdup | * | 98.3829 | 98.6521 | 98.1152 | 93.4371 | 8417 | 115 | 8381 | 161 | 27 | 16.7702 | |
| ckim-isaac | SNP | ti | segdup | * | 98.3830 | 96.8521 | 99.9630 | 86.8421 | 18922 | 615 | 18922 | 7 | 3 | 42.8571 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.3830 | 98.4436 | 98.3226 | 73.6125 | 1518 | 24 | 1524 | 26 | 5 | 19.2308 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3834 | 97.9310 | 98.8399 | 66.3544 | 426 | 9 | 426 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.3834 | 96.8782 | 99.9360 | 67.6999 | 4686 | 151 | 4686 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l150_m0_e0 | homalt | 98.3835 | 96.9938 | 99.8136 | 78.2964 | 2678 | 83 | 2678 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.3836 | 98.4252 | 98.3421 | 86.5303 | 1125 | 18 | 1127 | 19 | 8 | 42.1053 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.3842 | 96.8198 | 100.0000 | 64.1060 | 274 | 9 | 271 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 98.3844 | 98.7013 | 98.0695 | 88.5449 | 760 | 10 | 762 | 15 | 2 | 13.3333 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.3846 | 98.1183 | 98.6523 | 89.5962 | 365 | 7 | 366 | 5 | 3 | 60.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.3847 | 97.8381 | 98.9375 | 61.5106 | 30729 | 679 | 30729 | 330 | 295 | 89.3939 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.3847 | 97.8381 | 98.9375 | 61.5106 | 30729 | 679 | 30729 | 330 | 295 | 89.3939 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3847 | 96.8208 | 100.0000 | 66.2978 | 335 | 11 | 335 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.3853 | 98.0620 | 98.7107 | 74.2575 | 8956 | 177 | 8958 | 117 | 19 | 16.2393 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.3853 | 98.0620 | 98.7107 | 74.2575 | 8956 | 177 | 8958 | 117 | 19 | 16.2393 | |
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | het | 98.3855 | 97.2047 | 99.5955 | 74.1909 | 12310 | 354 | 12310 | 50 | 23 | 46.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3855 | 99.7116 | 97.0943 | 71.3328 | 1383 | 4 | 1370 | 41 | 1 | 2.4390 | |
| bgallagher-sentieon | SNP | * | map_l250_m1_e0 | * | 98.3858 | 98.7400 | 98.0341 | 88.9251 | 7131 | 91 | 7131 | 143 | 31 | 21.6783 | |
| ghariani-varprowl | SNP | * | map_siren | het | 98.3861 | 99.3911 | 97.4013 | 64.9618 | 90437 | 554 | 90440 | 2413 | 303 | 12.5570 | |
| jli-custom | INDEL | I6_15 | * | homalt | 98.3861 | 99.6634 | 97.1411 | 49.1984 | 6218 | 21 | 6218 | 183 | 180 | 98.3607 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.3863 | 99.8976 | 96.9200 | 41.4826 | 1951 | 2 | 1951 | 62 | 62 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.3863 | 99.8976 | 96.9200 | 41.5335 | 1951 | 2 | 1951 | 62 | 62 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 98.3863 | 97.9879 | 98.7879 | 88.9681 | 487 | 10 | 489 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.3869 | 97.8750 | 98.9043 | 46.8420 | 17871 | 388 | 17872 | 198 | 194 | 97.9798 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | homalt | 98.3869 | 97.3084 | 99.4896 | 73.1420 | 8966 | 248 | 8967 | 46 | 9 | 19.5652 | |