PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69401-69450 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | homalt | 98.2846 | 97.0633 | 99.5370 | 78.0859 | 1289 | 39 | 1290 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | het | 98.2852 | 97.4779 | 99.1060 | 84.2645 | 773 | 20 | 776 | 7 | 5 | 71.4286 | |
| astatham-gatk | INDEL | D16_PLUS | HG002complexvar | het | 98.2855 | 98.6450 | 97.9287 | 68.7747 | 1092 | 15 | 851 | 18 | 11 | 61.1111 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | * | 98.2857 | 97.7273 | 98.8506 | 91.7103 | 172 | 4 | 172 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2857 | 96.6292 | 100.0000 | 67.9104 | 86 | 3 | 86 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.2857 | 96.6292 | 100.0000 | 81.5451 | 172 | 6 | 172 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.2857 | 97.1751 | 99.4220 | 74.4838 | 172 | 5 | 172 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2863 | 99.7441 | 96.8705 | 43.6595 | 4677 | 12 | 4674 | 151 | 1 | 0.6623 | |
| hfeng-pmm1 | SNP | ti | map_l250_m0_e0 | * | 98.2865 | 98.3942 | 98.1792 | 92.9532 | 1348 | 22 | 1348 | 25 | 5 | 20.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | homalt | 98.2869 | 97.0402 | 99.5662 | 88.1078 | 918 | 28 | 918 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 98.2870 | 98.6226 | 97.9536 | 88.0013 | 716 | 10 | 718 | 15 | 2 | 13.3333 | |
| hfeng-pmm1 | SNP | ti | HG002compoundhet | * | 98.2873 | 96.6987 | 99.9291 | 34.1329 | 16901 | 577 | 16902 | 12 | 8 | 66.6667 | |
| cchapple-custom | SNP | ti | map_l125_m1_e0 | homalt | 98.2873 | 96.6410 | 99.9906 | 60.9405 | 10674 | 371 | 10672 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l250_m2_e1 | * | 98.2877 | 97.3832 | 99.2092 | 86.6868 | 7778 | 209 | 7778 | 62 | 30 | 48.3871 | |
| gduggal-bwafb | SNP | ti | map_l125_m0_e0 | het | 98.2879 | 98.3057 | 98.2700 | 78.1213 | 8123 | 140 | 8123 | 143 | 44 | 30.7692 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | het | 98.2879 | 97.1825 | 99.4189 | 73.8528 | 4277 | 124 | 4277 | 25 | 11 | 44.0000 | |
| hfeng-pmm3 | SNP | ti | HG002compoundhet | * | 98.2879 | 96.7330 | 99.8937 | 34.5867 | 16907 | 571 | 16909 | 18 | 8 | 44.4444 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.2885 | 97.1365 | 99.4681 | 47.3280 | 10109 | 298 | 10098 | 54 | 38 | 70.3704 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.2886 | 97.4684 | 99.1228 | 83.5498 | 308 | 8 | 339 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2887 | 99.8934 | 96.7349 | 41.2956 | 4684 | 5 | 4681 | 158 | 1 | 0.6329 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.2889 | 98.3993 | 98.1788 | 72.3290 | 3504 | 57 | 3504 | 65 | 45 | 69.2308 | |
| asubramanian-gatk | INDEL | D16_PLUS | * | homalt | 98.2891 | 98.4634 | 98.1154 | 70.9396 | 1666 | 26 | 1666 | 32 | 25 | 78.1250 | |
| anovak-vg | SNP | * | HG002complexvar | homalt | 98.2895 | 97.5091 | 99.0824 | 19.5966 | 281387 | 7188 | 273293 | 2531 | 2130 | 84.1565 | |
| asubramanian-gatk | INDEL | I6_15 | HG002complexvar | homalt | 98.2899 | 99.4234 | 97.1820 | 55.6903 | 1207 | 7 | 1207 | 35 | 34 | 97.1429 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.2899 | 98.0823 | 98.4984 | 72.4641 | 2097 | 41 | 2099 | 32 | 22 | 68.7500 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.2901 | 99.5113 | 97.0984 | 68.6486 | 3258 | 16 | 3246 | 97 | 94 | 96.9072 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.2904 | 99.2602 | 97.3394 | 75.4562 | 21737 | 162 | 21732 | 594 | 582 | 97.9798 | |
| ckim-isaac | INDEL | I1_5 | func_cds | homalt | 98.2906 | 96.6387 | 100.0000 | 22.2973 | 115 | 4 | 115 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l250_m1_e0 | het | 98.2909 | 98.8208 | 97.7667 | 90.5159 | 2933 | 35 | 2933 | 67 | 7 | 10.4478 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2911 | 97.7633 | 98.8245 | 75.3849 | 2404 | 55 | 2354 | 28 | 12 | 42.8571 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e0 | het | 98.2912 | 98.1891 | 98.3936 | 88.4562 | 488 | 9 | 490 | 8 | 0 | 0.0000 | |
| jli-custom | SNP | * | map_l250_m2_e0 | * | 98.2912 | 97.3874 | 99.2119 | 86.5904 | 7679 | 206 | 7679 | 61 | 30 | 49.1803 | |
| hfeng-pmm3 | SNP | * | map_l250_m0_e0 | * | 98.2916 | 98.3607 | 98.2226 | 92.8676 | 2100 | 35 | 2100 | 38 | 6 | 15.7895 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.2920 | 98.3891 | 98.1951 | 74.4975 | 29989 | 491 | 29542 | 543 | 428 | 78.8214 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.2920 | 98.3891 | 98.1951 | 74.4975 | 29989 | 491 | 29542 | 543 | 428 | 78.8214 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.2925 | 97.1972 | 99.4127 | 32.2154 | 6693 | 193 | 6771 | 40 | 40 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2925 | 99.2749 | 97.3294 | 48.4124 | 4655 | 34 | 4665 | 128 | 17 | 13.2812 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2925 | 98.9506 | 97.6432 | 71.0801 | 17632 | 187 | 17235 | 416 | 367 | 88.2212 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.2933 | 97.4269 | 99.1752 | 74.7089 | 8898 | 235 | 8898 | 74 | 10 | 13.5135 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.2933 | 97.4269 | 99.1752 | 74.7089 | 8898 | 235 | 8898 | 74 | 10 | 13.5135 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2934 | 98.0494 | 98.5385 | 48.6812 | 6585 | 131 | 8091 | 120 | 75 | 62.5000 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | het | 98.2935 | 100.0000 | 96.6443 | 81.6953 | 4 | 0 | 144 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.2935 | 97.2973 | 99.3103 | 79.6919 | 144 | 4 | 144 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e1 | het | 98.2939 | 98.0824 | 98.5064 | 86.5724 | 1381 | 27 | 1385 | 21 | 3 | 14.2857 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.2939 | 98.0121 | 98.5773 | 60.5225 | 15728 | 319 | 15729 | 227 | 215 | 94.7137 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.2940 | 96.7497 | 99.8884 | 27.0952 | 893 | 30 | 895 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.2940 | 99.3207 | 97.2884 | 75.8975 | 19446 | 133 | 19446 | 542 | 30 | 5.5351 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.2940 | 99.3207 | 97.2884 | 75.8975 | 19446 | 133 | 19446 | 542 | 30 | 5.5351 | |
| jli-custom | INDEL | * | map_l150_m2_e1 | * | 98.2943 | 98.0542 | 98.5356 | 89.3280 | 1411 | 28 | 1413 | 21 | 8 | 38.0952 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.2945 | 99.6172 | 97.0064 | 59.6494 | 8328 | 32 | 8328 | 257 | 256 | 99.6109 | |