PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69251-69300 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 89.6679 | 28 | 1 | 28 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 94.6768 | 28 | 1 | 28 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 89.6296 | 28 | 1 | 28 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l150_m2_e1 | * | 98.2467 | 98.9045 | 97.5976 | 79.0607 | 11376 | 126 | 11375 | 280 | 27 | 9.6429 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.2468 | 97.8723 | 98.6242 | 69.6350 | 1334 | 29 | 1362 | 19 | 4 | 21.0526 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e1 | homalt | 98.2472 | 97.0935 | 99.4288 | 88.0788 | 2639 | 79 | 2611 | 15 | 10 | 66.6667 | |
| gduggal-bwavard | SNP | tv | HG002complexvar | * | 98.2474 | 97.1213 | 99.3998 | 22.3354 | 239069 | 7086 | 234343 | 1415 | 923 | 65.2297 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | het | 98.2477 | 98.6282 | 97.8701 | 83.2230 | 2804 | 39 | 2803 | 61 | 3 | 4.9180 | |
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | het | 98.2480 | 98.7552 | 97.7459 | 87.7633 | 476 | 6 | 477 | 11 | 3 | 27.2727 | |
| ckim-isaac | SNP | * | segdup | * | 98.2480 | 96.6046 | 99.9484 | 87.4705 | 27114 | 953 | 27116 | 14 | 7 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | * | 98.2484 | 98.3558 | 98.1413 | 87.8949 | 1316 | 22 | 1320 | 25 | 6 | 24.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | het | 98.2484 | 97.1302 | 99.3926 | 71.9668 | 2640 | 78 | 2618 | 16 | 8 | 50.0000 | |
| cchapple-custom | SNP | * | map_l150_m2_e1 | homalt | 98.2494 | 96.5672 | 99.9912 | 69.1407 | 11421 | 406 | 11416 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.2500 | 97.3962 | 99.1189 | 63.9192 | 1571 | 42 | 1575 | 14 | 1 | 7.1429 | |
| ckim-dragen | SNP | tv | map_l150_m2_e0 | * | 98.2503 | 98.9080 | 97.6013 | 79.0121 | 11231 | 124 | 11230 | 276 | 27 | 9.7826 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2507 | 97.3988 | 99.1176 | 69.0064 | 337 | 9 | 337 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2507 | 97.3988 | 99.1176 | 69.7509 | 337 | 9 | 337 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2507 | 97.3988 | 99.1176 | 69.3969 | 337 | 9 | 337 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.2509 | 96.9956 | 99.5391 | 72.8687 | 15109 | 468 | 15117 | 70 | 47 | 67.1429 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | het | 98.2510 | 98.1688 | 98.3333 | 82.0789 | 1233 | 23 | 1475 | 25 | 8 | 32.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2513 | 99.5095 | 97.0246 | 43.7566 | 4666 | 23 | 4663 | 143 | 1 | 0.6993 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2514 | 97.6938 | 98.8154 | 81.5275 | 2584 | 61 | 2586 | 31 | 13 | 41.9355 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | homalt | 98.2517 | 98.9437 | 97.5694 | 89.3570 | 281 | 3 | 281 | 7 | 5 | 71.4286 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | * | 98.2517 | 98.5762 | 97.9294 | 87.1694 | 2077 | 30 | 2081 | 44 | 7 | 15.9091 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2518 | 96.9828 | 99.5546 | 70.6344 | 450 | 14 | 447 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | map_l250_m1_e0 | homalt | 98.2519 | 97.1579 | 99.3708 | 87.2425 | 2393 | 70 | 2369 | 15 | 10 | 66.6667 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2520 | 97.4920 | 99.0239 | 63.2840 | 63712 | 1639 | 63508 | 626 | 529 | 84.5048 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.2520 | 97.4920 | 99.0239 | 63.2840 | 63712 | 1639 | 63508 | 626 | 529 | 84.5048 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.2521 | 96.8864 | 99.6568 | 72.9143 | 15092 | 485 | 15100 | 52 | 45 | 86.5385 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m1_e0 | het | 98.2526 | 98.1481 | 98.3573 | 87.3539 | 477 | 9 | 479 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | homalt | 98.2526 | 96.7441 | 99.8089 | 63.7260 | 8914 | 300 | 8881 | 17 | 11 | 64.7059 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.2527 | 96.5796 | 99.9848 | 34.0696 | 6579 | 233 | 6596 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.2533 | 96.5665 | 100.0000 | 76.0711 | 225 | 8 | 229 | 0 | 0 | ||
| qzeng-custom | SNP | tv | * | hetalt | 98.2537 | 97.2445 | 99.2840 | 55.4492 | 847 | 24 | 832 | 6 | 5 | 83.3333 | |
| qzeng-custom | SNP | * | * | hetalt | 98.2537 | 97.2445 | 99.2840 | 55.4492 | 847 | 24 | 832 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2538 | 97.1415 | 99.3919 | 50.2946 | 35546 | 1046 | 35469 | 217 | 179 | 82.4885 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.2544 | 100.0000 | 96.5686 | 43.8017 | 197 | 0 | 197 | 7 | 2 | 28.5714 | |
| hfeng-pmm2 | INDEL | * | map_l125_m2_e1 | * | 98.2545 | 98.5618 | 97.9492 | 88.0799 | 2193 | 32 | 2197 | 46 | 7 | 15.2174 | |
| hfeng-pmm2 | INDEL | * | map_l125_m2_e0 | * | 98.2547 | 98.5883 | 97.9233 | 87.9829 | 2165 | 31 | 2169 | 46 | 7 | 15.2174 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.2548 | 98.6087 | 97.9035 | 45.6956 | 3402 | 48 | 3409 | 73 | 33 | 45.2055 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2552 | 98.0301 | 98.4813 | 60.8417 | 846 | 17 | 843 | 13 | 10 | 76.9231 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2552 | 98.0301 | 98.4813 | 61.4241 | 846 | 17 | 843 | 13 | 9 | 69.2308 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2558 | 96.5714 | 100.0000 | 67.1154 | 169 | 6 | 171 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | het | 98.2562 | 98.1803 | 98.3322 | 81.6008 | 1187 | 22 | 1415 | 24 | 8 | 33.3333 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2571 | 98.0815 | 98.4334 | 52.3164 | 35890 | 702 | 35814 | 570 | 538 | 94.3860 | |
| hfeng-pmm1 | INDEL | D6_15 | * | het | 98.2571 | 97.6449 | 98.8769 | 58.2726 | 11319 | 273 | 11269 | 128 | 111 | 86.7188 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.2572 | 99.6364 | 96.9158 | 68.2486 | 822 | 3 | 817 | 26 | 25 | 96.1538 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.2572 | 99.6364 | 96.9158 | 68.2486 | 822 | 3 | 817 | 26 | 25 | 96.1538 | |
| ltrigg-rtg1 | INDEL | I6_15 | segdup | * | 98.2573 | 97.1429 | 99.3976 | 90.0360 | 170 | 5 | 165 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_siren | * | 98.2573 | 97.5304 | 98.9952 | 77.5300 | 7227 | 183 | 7192 | 73 | 11 | 15.0685 | |