PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68901-68950 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 89.8876 | 27 | 1 | 27 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1818 | 96.4286 | 100.0000 | 74.2243 | 108 | 4 | 108 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | segdup | het | 98.1818 | 97.5904 | 98.7805 | 93.7690 | 81 | 2 | 81 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1818 | 98.7805 | 97.5904 | 92.8387 | 81 | 1 | 81 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 89.8496 | 27 | 1 | 27 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1818 | 96.4286 | 100.0000 | 75.1152 | 108 | 4 | 108 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 98.1818 | 100.0000 | 96.4286 | 94.9911 | 27 | 0 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 98.1818 | 100.0000 | 96.4286 | 95.6386 | 27 | 0 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 88.2609 | 27 | 1 | 27 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 88.4120 | 27 | 1 | 27 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 87.6712 | 27 | 1 | 27 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1818 | 96.4286 | 100.0000 | 74.6479 | 108 | 4 | 108 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_siren | hetalt | 98.1818 | 96.4286 | 100.0000 | 86.7647 | 108 | 4 | 108 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.1818 | 96.4286 | 100.0000 | 61.3333 | 27 | 1 | 29 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 90.2527 | 27 | 1 | 27 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | homalt | 98.1818 | 98.7805 | 97.5904 | 89.6894 | 162 | 2 | 162 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 87.5576 | 27 | 1 | 27 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m2_e0 | homalt | 98.1821 | 96.4417 | 99.9864 | 68.7543 | 7345 | 271 | 7343 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e1 | het | 98.1822 | 98.4992 | 97.8671 | 90.6974 | 5185 | 79 | 5185 | 113 | 10 | 8.8496 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.1825 | 99.6937 | 96.7164 | 71.0458 | 651 | 2 | 648 | 22 | 21 | 95.4545 | |
| ndellapenna-hhga | SNP | ti | map_l250_m1_e0 | * | 98.1834 | 96.7897 | 99.6179 | 87.3096 | 4432 | 147 | 4432 | 17 | 9 | 52.9412 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1834 | 97.9681 | 98.3997 | 62.7279 | 14320 | 297 | 13958 | 227 | 196 | 86.3436 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1835 | 98.9169 | 97.4610 | 70.8771 | 17626 | 193 | 17235 | 449 | 399 | 88.8641 | |
| raldana-dualsentieon | SNP | * | map_l250_m2_e1 | * | 98.1843 | 98.1720 | 98.1966 | 88.3789 | 7841 | 146 | 7841 | 144 | 6 | 4.1667 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1845 | 96.8509 | 99.5553 | 39.7095 | 17684 | 575 | 17685 | 79 | 67 | 84.8101 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.1850 | 99.4746 | 96.9283 | 66.0880 | 568 | 3 | 568 | 18 | 18 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1851 | 98.1667 | 98.2036 | 71.4828 | 2945 | 55 | 2952 | 54 | 8 | 14.8148 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | * | 98.1855 | 96.8824 | 99.5241 | 87.6224 | 7738 | 249 | 7738 | 37 | 19 | 51.3514 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e0 | het | 98.1856 | 97.6289 | 98.7487 | 88.3106 | 1894 | 46 | 1894 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.1861 | 99.8938 | 96.5358 | 60.0431 | 3762 | 4 | 3762 | 135 | 132 | 97.7778 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.1861 | 99.8938 | 96.5358 | 60.0431 | 3762 | 4 | 3762 | 135 | 132 | 97.7778 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1862 | 98.0000 | 98.3732 | 57.8969 | 1029 | 21 | 1028 | 17 | 10 | 58.8235 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e0 | het | 98.1864 | 98.4983 | 97.8764 | 90.6378 | 5116 | 78 | 5116 | 111 | 10 | 9.0090 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e0 | homalt | 98.1866 | 96.7610 | 99.6549 | 90.0329 | 2599 | 87 | 2599 | 9 | 5 | 55.5556 | |
| ghariani-varprowl | SNP | ti | map_l125_m1_e0 | * | 98.1866 | 98.6569 | 97.7208 | 74.6512 | 28941 | 394 | 28941 | 675 | 158 | 23.4074 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.1870 | 98.6301 | 97.7477 | 76.6562 | 648 | 9 | 651 | 15 | 6 | 40.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | * | 98.1873 | 97.4817 | 98.9032 | 83.5913 | 3600 | 93 | 3607 | 40 | 9 | 22.5000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.1873 | 97.1129 | 99.2857 | 84.4854 | 1110 | 33 | 1112 | 8 | 1 | 12.5000 | |
| asubramanian-gatk | SNP | tv | HG002complexvar | het | 98.1875 | 96.4619 | 99.9759 | 22.1458 | 145398 | 5333 | 145329 | 35 | 10 | 28.5714 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.1878 | 96.9931 | 99.4123 | 51.7989 | 3387 | 105 | 3383 | 20 | 14 | 70.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1886 | 98.1028 | 98.2745 | 88.1406 | 1241 | 24 | 1253 | 22 | 8 | 36.3636 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m2_e0 | het | 98.1887 | 97.9879 | 98.3903 | 88.1186 | 487 | 10 | 489 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.1888 | 96.9780 | 99.4302 | 83.5211 | 353 | 11 | 349 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.1891 | 97.1291 | 99.2726 | 27.7365 | 4635 | 137 | 4640 | 34 | 34 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | * | 98.1894 | 98.1869 | 98.1919 | 88.2765 | 704 | 13 | 706 | 13 | 6 | 46.1538 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | * | 98.1895 | 97.4902 | 98.8989 | 82.4896 | 3496 | 90 | 3503 | 39 | 9 | 23.0769 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.1896 | 97.1447 | 99.2573 | 75.8638 | 1497 | 44 | 1470 | 11 | 4 | 36.3636 | |
| hfeng-pmm1 | INDEL | D6_15 | * | * | 98.1898 | 97.0872 | 99.3178 | 50.8773 | 25332 | 760 | 25331 | 174 | 155 | 89.0805 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1900 | 99.0255 | 97.3686 | 74.3160 | 14429 | 142 | 14616 | 395 | 10 | 2.5317 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1900 | 99.0255 | 97.3686 | 74.3160 | 14429 | 142 | 14616 | 395 | 10 | 2.5317 | |