PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68251-68300 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | * | map_l250_m0_e0 | homalt | 98.0392 | 100.0000 | 96.1538 | 97.3604 | 25 | 0 | 25 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.3425 | 50 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 87.1795 | 25 | 1 | 25 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 60.1562 | 50 | 2 | 51 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | homalt | 98.0392 | 100.0000 | 96.1538 | 96.6013 | 9 | 0 | 25 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.0392 | 100.0000 | 96.1538 | 79.7665 | 1 | 0 | 50 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | hetalt | 98.0392 | 100.0000 | 96.1538 | 81.9444 | 3 | 0 | 25 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 60.7692 | 50 | 2 | 51 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 98.0392 | 97.1503 | 98.9446 | 91.0613 | 375 | 11 | 375 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 98.0392 | 96.1538 | 100.0000 | 96.7866 | 25 | 1 | 25 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 98.0392 | 96.1538 | 100.0000 | 96.8153 | 25 | 1 | 25 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 89.5833 | 25 | 1 | 25 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 89.4958 | 25 | 1 | 25 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0392 | 97.6562 | 98.4252 | 84.5998 | 375 | 9 | 375 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.9645 | 50 | 2 | 50 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 90.3846 | 25 | 1 | 25 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | segdup | homalt | 98.0392 | 100.0000 | 96.1538 | 92.5714 | 50 | 0 | 50 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.0394 | 97.9699 | 98.1089 | 39.1064 | 1303 | 27 | 1297 | 25 | 25 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.0398 | 97.0909 | 99.0074 | 61.6738 | 801 | 24 | 798 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.0398 | 97.0909 | 99.0074 | 61.6738 | 801 | 24 | 798 | 8 | 7 | 87.5000 | |
| ghariani-varprowl | SNP | * | map_l250_m1_e0 | homalt | 98.0400 | 96.4677 | 99.6644 | 87.9687 | 2376 | 87 | 2376 | 8 | 4 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.0405 | 98.5626 | 97.5238 | 64.3342 | 480 | 7 | 512 | 13 | 4 | 30.7692 | |
| gduggal-snapvard | SNP | * | map_l100_m1_e0 | homalt | 98.0408 | 96.3523 | 99.7895 | 60.4906 | 26018 | 985 | 25605 | 54 | 41 | 75.9259 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0410 | 96.8402 | 99.2720 | 68.1668 | 15569 | 508 | 15546 | 114 | 94 | 82.4561 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0410 | 96.8402 | 99.2720 | 68.1668 | 15569 | 508 | 15546 | 114 | 94 | 82.4561 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.0412 | 96.4378 | 99.6987 | 66.1107 | 2978 | 110 | 2978 | 9 | 7 | 77.7778 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e1 | homalt | 98.0418 | 96.3556 | 99.7880 | 62.8493 | 26783 | 1013 | 26357 | 56 | 43 | 76.7857 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e0 | het | 98.0419 | 98.6129 | 97.4776 | 86.6167 | 2275 | 32 | 2280 | 59 | 11 | 18.6441 | |
| ckim-gatk | INDEL | I1_5 | segdup | * | 98.0421 | 99.1501 | 96.9585 | 95.6110 | 1050 | 9 | 1052 | 33 | 2 | 6.0606 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0423 | 99.2126 | 96.8992 | 68.9904 | 126 | 1 | 125 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | hetalt | 98.0424 | 96.5838 | 99.5458 | 62.4013 | 9867 | 349 | 9863 | 45 | 45 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.0425 | 97.0760 | 99.0284 | 79.6316 | 1328 | 40 | 1325 | 13 | 2 | 15.3846 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | het | 98.0426 | 96.3815 | 99.7620 | 61.0832 | 7964 | 299 | 7964 | 19 | 3 | 15.7895 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.0428 | 98.5294 | 97.5610 | 92.5617 | 201 | 3 | 200 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.0428 | 96.9002 | 99.2126 | 71.4874 | 1563 | 50 | 1512 | 12 | 7 | 58.3333 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0429 | 96.5665 | 99.5652 | 76.4344 | 225 | 8 | 229 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0429 | 96.5665 | 99.5652 | 76.2642 | 225 | 8 | 229 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_siren | het | 98.0429 | 97.8328 | 98.2539 | 63.2948 | 89019 | 1972 | 89021 | 1582 | 312 | 19.7219 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | * | 98.0431 | 97.7147 | 98.3737 | 89.9899 | 4960 | 116 | 4960 | 82 | 25 | 30.4878 | |
| hfeng-pmm2 | INDEL | * | map_l100_m1_e0 | het | 98.0433 | 98.4787 | 97.6117 | 85.3524 | 2201 | 34 | 2207 | 54 | 7 | 12.9630 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.0433 | 97.5410 | 98.5507 | 69.5460 | 476 | 12 | 476 | 7 | 4 | 57.1429 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | het | 98.0436 | 96.4010 | 99.7431 | 60.6061 | 6991 | 261 | 6989 | 18 | 1 | 5.5556 | |
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.0436 | 96.7173 | 99.4069 | 53.0396 | 17265 | 586 | 17262 | 103 | 9 | 8.7379 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0439 | 96.5665 | 99.5671 | 75.8368 | 225 | 8 | 230 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.0445 | 97.1326 | 98.9736 | 79.7926 | 1355 | 40 | 1350 | 14 | 2 | 14.2857 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0447 | 96.7213 | 99.4048 | 55.2000 | 118 | 4 | 167 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | het | 98.0450 | 97.9007 | 98.1897 | 82.8404 | 4990 | 107 | 4990 | 92 | 34 | 36.9565 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0454 | 96.7804 | 99.3438 | 49.5652 | 30962 | 1030 | 30885 | 204 | 187 | 91.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | het | 98.0464 | 99.0099 | 97.1014 | 89.8080 | 200 | 2 | 201 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.0469 | 96.8750 | 99.2474 | 78.8205 | 1054 | 34 | 1055 | 8 | 1 | 12.5000 | |