PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67951-68000 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.9694 | 99.9307 | 96.0837 | 66.5958 | 10090 | 7 | 10108 | 412 | 277 | 67.2330 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.9702 | 98.9938 | 96.9676 | 70.5278 | 19382 | 197 | 19570 | 612 | 14 | 2.2876 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.9702 | 98.9938 | 96.9676 | 70.5278 | 19382 | 197 | 19570 | 612 | 14 | 2.2876 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.9702 | 96.0212 | 100.0000 | 40.0000 | 1086 | 45 | 1092 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | * | 97.9708 | 97.5460 | 98.3993 | 98.1181 | 3498 | 88 | 3504 | 57 | 26 | 45.6140 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9708 | 98.8342 | 97.1223 | 75.2765 | 3052 | 36 | 3105 | 92 | 13 | 14.1304 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.9710 | 97.6879 | 98.2558 | 68.8688 | 338 | 8 | 338 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.9710 | 98.8304 | 97.1264 | 94.1037 | 169 | 2 | 169 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.9716 | 99.0079 | 96.9569 | 71.5543 | 5788 | 58 | 5735 | 180 | 166 | 92.2222 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.9716 | 99.0079 | 96.9569 | 71.5543 | 5788 | 58 | 5735 | 180 | 166 | 92.2222 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | * | 97.9722 | 97.4005 | 98.5507 | 83.3204 | 3597 | 96 | 3604 | 53 | 13 | 24.5283 | |
| mlin-fermikit | INDEL | I1_5 | segdup | homalt | 97.9723 | 97.0402 | 98.9224 | 91.0078 | 459 | 14 | 459 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.9734 | 96.5087 | 99.4832 | 66.2598 | 387 | 14 | 385 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | segdup | het | 97.9748 | 98.6357 | 97.3226 | 94.1248 | 1446 | 20 | 1454 | 40 | 27 | 67.5000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9752 | 96.7154 | 99.2683 | 46.8913 | 10718 | 364 | 10718 | 79 | 74 | 93.6709 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.9756 | 96.4774 | 99.5211 | 49.0897 | 35303 | 1289 | 35537 | 171 | 109 | 63.7427 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.9757 | 96.0317 | 100.0000 | 85.9206 | 121 | 5 | 117 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.9757 | 96.0317 | 100.0000 | 89.1577 | 121 | 5 | 121 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | * | 97.9763 | 97.9079 | 98.0447 | 88.3293 | 702 | 15 | 702 | 14 | 4 | 28.5714 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9766 | 99.6958 | 96.3156 | 68.1284 | 2950 | 9 | 2954 | 113 | 5 | 4.4248 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.9769 | 97.9769 | 97.9769 | 76.3823 | 339 | 7 | 339 | 7 | 6 | 85.7143 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.9773 | 97.5806 | 98.3773 | 68.8271 | 968 | 24 | 970 | 16 | 5 | 31.2500 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.9774 | 97.8472 | 98.1079 | 69.1926 | 1409 | 31 | 1400 | 27 | 11 | 40.7407 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9777 | 98.0072 | 97.9483 | 86.5329 | 1082 | 22 | 1098 | 23 | 6 | 26.0870 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.9782 | 96.4324 | 99.5745 | 60.1289 | 8109 | 300 | 8190 | 35 | 13 | 37.1429 | |
| ltrigg-rtg1 | INDEL | * | map_siren | * | 97.9785 | 96.9096 | 99.0713 | 78.1949 | 7181 | 229 | 7147 | 67 | 16 | 23.8806 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9790 | 97.7713 | 98.1875 | 54.9936 | 31279 | 713 | 31203 | 576 | 562 | 97.5694 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.9793 | 99.8507 | 96.1768 | 39.7598 | 4682 | 7 | 4679 | 186 | 1 | 0.5376 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 77.7778 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 77.3756 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 82.2064 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e0 | * | 97.9798 | 97.6058 | 98.3566 | 87.5544 | 2813 | 69 | 2813 | 47 | 31 | 65.9574 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.9798 | 99.3852 | 96.6135 | 70.8648 | 485 | 3 | 485 | 17 | 16 | 94.1176 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.9798 | 98.4772 | 97.4874 | 60.2000 | 194 | 3 | 194 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | SNP | * | map_l150_m0_e0 | het | 97.9798 | 98.0605 | 97.8994 | 80.7841 | 7786 | 154 | 7783 | 167 | 2 | 1.1976 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.9798 | 99.3852 | 96.6135 | 72.1575 | 485 | 3 | 485 | 17 | 16 | 94.1176 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9808 | 97.2102 | 98.7638 | 71.4047 | 1568 | 45 | 1518 | 19 | 12 | 63.1579 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.9809 | 98.0851 | 97.8769 | 63.9633 | 461 | 9 | 461 | 10 | 5 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9811 | 96.5062 | 99.5018 | 33.8856 | 6574 | 238 | 6591 | 33 | 32 | 96.9697 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 97.9819 | 98.4772 | 97.4916 | 87.0169 | 582 | 9 | 583 | 15 | 2 | 13.3333 | |
| dgrover-gatk | INDEL | * | map_l125_m1_e0 | het | 97.9822 | 98.0524 | 97.9120 | 89.0949 | 1309 | 26 | 1313 | 28 | 4 | 14.2857 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.9823 | 98.9848 | 97.0000 | 60.1594 | 195 | 2 | 194 | 6 | 6 | 100.0000 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.9824 | 97.9405 | 98.0243 | 36.9430 | 1284 | 27 | 1290 | 26 | 13 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | het | 97.9824 | 98.2413 | 97.7249 | 78.7694 | 2793 | 50 | 2792 | 65 | 38 | 58.4615 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | * | 97.9825 | 97.7253 | 98.2410 | 85.7697 | 1117 | 26 | 1117 | 20 | 8 | 40.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.9826 | 99.7269 | 96.2982 | 53.7111 | 9495 | 26 | 9495 | 365 | 360 | 98.6301 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | het | 97.9827 | 97.6623 | 98.3051 | 85.1328 | 752 | 18 | 754 | 13 | 2 | 15.3846 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9827 | 96.0452 | 100.0000 | 74.9267 | 170 | 7 | 171 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9827 | 96.0452 | 100.0000 | 69.1415 | 170 | 7 | 266 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.9827 | 98.8372 | 97.1429 | 80.2036 | 170 | 2 | 170 | 5 | 1 | 20.0000 | |