PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67751-67800 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | het | 97.9160 | 98.5600 | 97.2803 | 74.2359 | 7118 | 104 | 7118 | 199 | 34 | 17.0854 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9164 | 96.9262 | 98.9270 | 73.8349 | 473 | 15 | 461 | 5 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 95.5128 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 93.8826 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 54.6296 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 50.5051 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 54.6296 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 49.4845 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 93.8596 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 93.9581 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 54.2056 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m0_e0 | * | 97.9174 | 98.3871 | 97.4522 | 88.7253 | 305 | 5 | 306 | 8 | 2 | 25.0000 | |
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | het | 97.9174 | 98.4270 | 97.4132 | 88.3493 | 1314 | 21 | 1318 | 35 | 5 | 14.2857 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | het | 97.9184 | 96.7078 | 99.1597 | 85.5451 | 470 | 16 | 472 | 4 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.9190 | 99.2554 | 96.6182 | 68.9966 | 2666 | 20 | 2657 | 93 | 4 | 4.3011 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.9194 | 98.3001 | 97.5417 | 56.1712 | 16885 | 292 | 17260 | 435 | 173 | 39.7701 | |
| gduggal-bwafb | SNP | * | HG002compoundhet | * | 97.9194 | 99.0744 | 96.7911 | 45.9764 | 25583 | 239 | 25699 | 852 | 222 | 26.0563 | |
| ckim-dragen | INDEL | D6_15 | * | * | 97.9198 | 97.6928 | 98.1478 | 56.3201 | 25490 | 602 | 25488 | 481 | 433 | 90.0208 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9203 | 97.9167 | 97.9239 | 65.8796 | 564 | 12 | 566 | 12 | 9 | 75.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | het | 97.9207 | 97.1446 | 98.7093 | 76.2482 | 1633 | 48 | 1606 | 21 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.9211 | 97.8503 | 97.9920 | 79.1387 | 1229 | 27 | 1220 | 25 | 7 | 28.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9217 | 96.6692 | 99.2071 | 63.7791 | 5137 | 177 | 5380 | 43 | 37 | 86.0465 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9224 | 96.5693 | 99.3139 | 68.5406 | 3040 | 108 | 3040 | 21 | 10 | 47.6190 | |
| jmaeng-gatk | INDEL | D6_15 | HG002complexvar | * | 97.9225 | 97.3595 | 98.4921 | 58.5358 | 5162 | 140 | 5160 | 79 | 74 | 93.6709 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.9231 | 96.3983 | 99.4970 | 32.0574 | 910 | 34 | 989 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.9231 | 96.3983 | 99.4970 | 32.4728 | 910 | 34 | 989 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | * | 97.9240 | 96.5649 | 99.3219 | 86.9151 | 2783 | 99 | 2783 | 19 | 10 | 52.6316 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | het | 97.9249 | 97.7178 | 98.1328 | 87.6884 | 471 | 11 | 473 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | * | 97.9254 | 98.5800 | 97.2794 | 89.7079 | 1319 | 19 | 1323 | 37 | 6 | 16.2162 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | homalt | 97.9259 | 96.9697 | 98.9011 | 86.8345 | 448 | 14 | 450 | 5 | 4 | 80.0000 | |
| qzeng-custom | SNP | tv | segdup | het | 97.9263 | 98.4679 | 97.3907 | 94.6360 | 5206 | 81 | 5188 | 139 | 6 | 4.3166 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.9263 | 97.7011 | 98.1524 | 69.9306 | 425 | 10 | 425 | 8 | 5 | 62.5000 | |
| ckim-vqsr | INDEL | D16_PLUS | * | * | 97.9266 | 97.9363 | 97.9170 | 71.5505 | 6644 | 140 | 6628 | 141 | 105 | 74.4681 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9275 | 98.4375 | 97.4227 | 86.2069 | 378 | 6 | 378 | 10 | 2 | 20.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.9275 | 97.9239 | 97.9310 | 91.1206 | 283 | 6 | 284 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.9276 | 97.0798 | 98.7903 | 74.9326 | 1496 | 45 | 1470 | 18 | 5 | 27.7778 | |
| ckim-dragen | INDEL | D1_5 | map_siren | het | 97.9286 | 98.6825 | 97.1861 | 82.8253 | 2247 | 30 | 2245 | 65 | 4 | 6.1539 | |
| gduggal-snapvard | SNP | ti | map_l100_m1_e0 | homalt | 97.9288 | 96.1470 | 99.7778 | 60.0714 | 17268 | 692 | 17067 | 38 | 31 | 81.5789 | |
| eyeh-varpipe | SNP | ti | segdup | het | 97.9291 | 99.8421 | 96.0882 | 90.6738 | 12011 | 19 | 11815 | 481 | 3 | 0.6237 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.9293 | 97.2651 | 98.6025 | 47.2860 | 13408 | 377 | 13406 | 190 | 185 | 97.3684 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9298 | 97.5741 | 98.2882 | 73.1623 | 724 | 18 | 689 | 12 | 6 | 50.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.9300 | 96.4838 | 99.4203 | 88.6662 | 1372 | 50 | 1372 | 8 | 7 | 87.5000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9305 | 96.9699 | 98.9103 | 71.3156 | 15105 | 472 | 17790 | 196 | 180 | 91.8367 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.9310 | 95.9459 | 100.0000 | 80.5479 | 71 | 3 | 71 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.9310 | 95.9459 | 100.0000 | 81.4136 | 71 | 3 | 71 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 97.9310 | 97.2603 | 98.6111 | 93.1689 | 71 | 2 | 71 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.9310 | 95.9459 | 100.0000 | 80.6011 | 71 | 3 | 71 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | * | hetalt | 97.9310 | 96.5544 | 99.3475 | 70.1886 | 9892 | 353 | 10049 | 66 | 65 | 98.4848 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.9319 | 97.2574 | 98.6159 | 84.9620 | 1383 | 39 | 1425 | 20 | 10 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | * | 97.9323 | 97.4432 | 98.4263 | 99.0377 | 1372 | 36 | 1376 | 22 | 10 | 45.4545 | |