PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67701-67750 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.9052 | 96.1507 | 99.7250 | 58.1999 | 10491 | 420 | 10518 | 29 | 27 | 93.1034 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | het | 97.9052 | 98.1362 | 97.6753 | 80.7049 | 5002 | 95 | 5000 | 119 | 1 | 0.8403 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.9056 | 96.5937 | 99.2537 | 71.5700 | 397 | 14 | 399 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m0_e0 | * | 97.9066 | 98.0645 | 97.7492 | 88.9363 | 304 | 6 | 304 | 7 | 2 | 28.5714 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.9067 | 99.3856 | 96.4712 | 41.4606 | 1941 | 12 | 1941 | 71 | 67 | 94.3662 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | * | 97.9068 | 97.5541 | 98.2622 | 89.4468 | 4467 | 112 | 4467 | 79 | 24 | 30.3797 | |
| egarrison-hhga | INDEL | * | segdup | het | 97.9069 | 98.6357 | 97.1888 | 94.2947 | 1446 | 20 | 1452 | 42 | 30 | 71.4286 | |
| gduggal-snapvard | SNP | tv | map_l100_m0_e0 | homalt | 97.9071 | 96.0998 | 99.7837 | 64.7675 | 3696 | 150 | 3690 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9078 | 97.1503 | 98.6772 | 90.6644 | 375 | 11 | 373 | 5 | 2 | 40.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | het | 97.9079 | 96.6535 | 99.1952 | 86.9004 | 491 | 17 | 493 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.9079 | 95.9016 | 100.0000 | 58.5714 | 117 | 5 | 116 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.9081 | 96.5168 | 99.3401 | 63.4667 | 15517 | 560 | 15655 | 104 | 87 | 83.6538 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.9081 | 96.5168 | 99.3401 | 63.4667 | 15517 | 560 | 15655 | 104 | 87 | 83.6538 | |
| dgrover-gatk | INDEL | I6_15 | * | * | 97.9082 | 97.2888 | 98.5355 | 53.2809 | 24150 | 673 | 24155 | 359 | 329 | 91.6435 | |
| cchapple-custom | SNP | tv | map_l125_m0_e0 | homalt | 97.9085 | 95.9027 | 100.0000 | 66.3984 | 2130 | 91 | 2129 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.9085 | 96.9156 | 98.9221 | 57.0053 | 1194 | 38 | 1193 | 13 | 11 | 84.6154 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.9085 | 96.6244 | 99.2272 | 64.2470 | 63145 | 2206 | 62918 | 490 | 402 | 82.0408 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.9085 | 96.6244 | 99.2272 | 64.2470 | 63145 | 2206 | 62918 | 490 | 402 | 82.0408 | |
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.9009 | 749 | 16 | 749 | 16 | 4 | 25.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.7817 | 749 | 16 | 749 | 16 | 3 | 18.7500 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.9086 | 98.2143 | 97.6048 | 77.2169 | 165 | 3 | 163 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | func_cds | * | 97.9088 | 99.5506 | 96.3203 | 53.9841 | 443 | 2 | 445 | 17 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.9089 | 96.2533 | 99.6225 | 65.2640 | 2903 | 113 | 2903 | 11 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9092 | 98.7644 | 97.0687 | 69.5742 | 27336 | 342 | 27419 | 828 | 294 | 35.5072 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9093 | 97.5848 | 98.2359 | 39.6520 | 17818 | 441 | 17820 | 320 | 305 | 95.3125 | |
| asubramanian-gatk | SNP | tv | HG002complexvar | homalt | 97.9093 | 95.9142 | 99.9890 | 23.2773 | 91225 | 3886 | 91211 | 10 | 8 | 80.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.9094 | 96.7480 | 99.0991 | 88.2228 | 238 | 8 | 220 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.9095 | 98.1671 | 97.6533 | 71.1033 | 17246 | 322 | 17311 | 416 | 17 | 4.0865 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | * | 97.9095 | 98.9919 | 96.8504 | 88.8865 | 491 | 5 | 492 | 16 | 3 | 18.7500 | |
| gduggal-snapvard | SNP | tv | segdup | * | 97.9096 | 97.0933 | 98.7396 | 94.2289 | 8284 | 248 | 8226 | 105 | 33 | 31.4286 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 97.9098 | 97.3958 | 98.4293 | 90.7996 | 187 | 5 | 188 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | * | map_l125_m1_e0 | homalt | 97.9102 | 96.1077 | 99.7817 | 66.1808 | 16247 | 658 | 15999 | 35 | 27 | 77.1429 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.9103 | 98.0469 | 97.7741 | 69.5010 | 1757 | 35 | 1757 | 40 | 30 | 75.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m0_e0 | het | 97.9106 | 98.9848 | 96.8595 | 86.1143 | 585 | 6 | 586 | 19 | 2 | 10.5263 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e0 | homalt | 97.9110 | 96.1094 | 99.7816 | 68.5446 | 16699 | 676 | 16446 | 36 | 28 | 77.7778 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9112 | 96.9995 | 98.8403 | 60.5859 | 1875 | 58 | 1875 | 22 | 21 | 95.4545 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.9112 | 96.6495 | 99.2063 | 75.8157 | 375 | 13 | 375 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 97.9133 | 98.7055 | 97.1338 | 71.1927 | 305 | 4 | 305 | 9 | 9 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | map_l250_m0_e0 | het | 97.9133 | 97.9657 | 97.8610 | 93.2569 | 915 | 19 | 915 | 20 | 3 | 15.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9134 | 97.1029 | 98.7375 | 60.0294 | 1877 | 56 | 1877 | 24 | 23 | 95.8333 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.9134 | 97.0765 | 98.7647 | 80.5287 | 8866 | 267 | 8875 | 111 | 13 | 11.7117 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.9134 | 97.0765 | 98.7647 | 80.5287 | 8866 | 267 | 8875 | 111 | 13 | 11.7117 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.9135 | 97.8996 | 97.9275 | 49.2246 | 3589 | 77 | 3591 | 76 | 67 | 88.1579 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9137 | 96.7068 | 99.1511 | 64.1489 | 5139 | 175 | 5139 | 44 | 40 | 90.9091 | |
| ciseli-custom | SNP | * | func_cds | * | 97.9137 | 99.4601 | 96.4146 | 25.6110 | 18052 | 98 | 17990 | 669 | 42 | 6.2780 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9145 | 97.8347 | 97.9944 | 55.0665 | 4202 | 93 | 4202 | 86 | 37 | 43.0233 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | * | 97.9147 | 96.4899 | 99.3822 | 78.5098 | 1292 | 47 | 1287 | 8 | 3 | 37.5000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9157 | 97.2833 | 98.5564 | 70.7710 | 752 | 21 | 751 | 11 | 10 | 90.9091 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e1 | * | 97.9158 | 97.4973 | 98.3378 | 98.2252 | 3662 | 94 | 3668 | 62 | 29 | 46.7742 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.9160 | 99.5572 | 96.3281 | 83.1889 | 1349 | 6 | 1233 | 47 | 30 | 63.8298 | |