PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67501-67550 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8690 | 98.8710 | 96.8872 | 72.0428 | 5780 | 66 | 5727 | 184 | 169 | 91.8478 | |
| ltrigg-rtg2 | INDEL | D6_15 | segdup | * | 97.8692 | 96.8586 | 98.9011 | 91.2793 | 185 | 6 | 180 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e1 | * | 97.8696 | 97.4293 | 98.3139 | 88.2398 | 758 | 20 | 758 | 13 | 6 | 46.1538 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8701 | 97.6006 | 98.1411 | 68.2416 | 63783 | 1568 | 63513 | 1203 | 1069 | 88.8612 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8701 | 97.6006 | 98.1411 | 68.2416 | 63783 | 1568 | 63513 | 1203 | 1069 | 88.8612 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.8706 | 96.2846 | 99.5098 | 88.3340 | 1218 | 47 | 1218 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | het | 97.8706 | 99.5778 | 96.2209 | 80.3517 | 20048 | 85 | 19427 | 763 | 22 | 2.8834 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.8712 | 96.3728 | 99.4169 | 41.9419 | 8954 | 337 | 9036 | 53 | 52 | 98.1132 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.8712 | 96.3728 | 99.4169 | 41.9419 | 8954 | 337 | 9036 | 53 | 52 | 98.1132 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.8714 | 98.8734 | 96.8895 | 83.9166 | 6582 | 75 | 6666 | 214 | 40 | 18.6916 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.8720 | 95.8799 | 99.9486 | 22.7273 | 3863 | 166 | 3891 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.6700 | 23 | 1 | 23 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.3396 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I6_15 | func_cds | het | 97.8723 | 95.8333 | 100.0000 | 39.4737 | 23 | 1 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 87.8307 | 23 | 1 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.0000 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | * | map_l250_m2_e1 | homalt | 97.8723 | 99.1379 | 96.6387 | 95.1744 | 115 | 1 | 115 | 4 | 3 | 75.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 89.0995 | 23 | 1 | 23 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 96.2036 | 46 | 2 | 47 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.8723 | 100.0000 | 95.8333 | 68.4211 | 92 | 0 | 92 | 4 | 4 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | segdup | homalt | 97.8723 | 97.8723 | 97.8723 | 92.5750 | 46 | 1 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.4121 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.7255 | 23 | 1 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.3128 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.3249 | 23 | 1 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | func_cds | het | 97.8723 | 95.8333 | 100.0000 | 37.8378 | 23 | 1 | 23 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.8723 | 97.8723 | 97.8723 | 51.5464 | 46 | 1 | 46 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 97.8723 | 95.8333 | 100.0000 | 92.3205 | 46 | 2 | 46 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 91.0853 | 23 | 1 | 23 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m0_e0 | * | 97.8723 | 97.8723 | 97.8723 | 93.1785 | 46 | 1 | 46 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.8723 | 97.1831 | 98.5714 | 91.2060 | 69 | 2 | 69 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.8723 | 95.8333 | 100.0000 | 86.3095 | 23 | 1 | 23 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | segdup | * | 97.8723 | 97.8723 | 97.8723 | 91.6961 | 46 | 1 | 46 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | homalt | 97.8723 | 99.1379 | 96.6387 | 95.8709 | 115 | 1 | 115 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 95.5597 | 46 | 0 | 46 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 85.0000 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 84.8101 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.3361 | 23 | 1 | 23 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 93.9547 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.8718 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 96.0338 | 46 | 2 | 47 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.7598 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 95.6881 | 46 | 2 | 47 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l125_m1_e0 | hetalt | 97.8723 | 95.8333 | 100.0000 | 64.0625 | 23 | 1 | 23 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l125_m2_e0 | hetalt | 97.8723 | 95.8333 | 100.0000 | 70.5128 | 23 | 1 | 23 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l125_m2_e1 | hetalt | 97.8723 | 95.8333 | 100.0000 | 70.5128 | 23 | 1 | 23 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 84.5161 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.4564 | 23 | 1 | 23 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 93.8540 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | het | 97.8723 | 95.8333 | 100.0000 | 96.8536 | 23 | 1 | 23 | 0 | 0 | ||