PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67251-67300 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8086 | 98.8224 | 96.8153 | 66.1962 | 13595 | 162 | 13589 | 447 | 406 | 90.8277 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | het | 97.8087 | 97.6911 | 97.9266 | 82.2279 | 1227 | 29 | 1228 | 26 | 9 | 34.6154 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.8088 | 99.1429 | 96.5101 | 64.4371 | 17698 | 153 | 17754 | 642 | 126 | 19.6262 | |
| astatham-gatk | INDEL | I6_15 | * | * | 97.8089 | 97.1035 | 98.5247 | 52.8353 | 24104 | 719 | 24109 | 361 | 337 | 93.3518 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | het | 97.8089 | 97.5524 | 98.0668 | 92.4426 | 558 | 14 | 558 | 11 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8091 | 97.3562 | 98.2662 | 76.6111 | 2099 | 57 | 2097 | 37 | 20 | 54.0541 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8094 | 96.1793 | 99.4957 | 50.2286 | 5513 | 219 | 5524 | 28 | 25 | 89.2857 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | het | 97.8094 | 98.2609 | 97.3621 | 87.4018 | 339 | 6 | 406 | 11 | 4 | 36.3636 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e0 | het | 97.8098 | 97.8351 | 97.7846 | 87.2638 | 1898 | 42 | 1898 | 43 | 27 | 62.7907 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e0 | * | 97.8099 | 97.7253 | 97.8947 | 86.9699 | 1117 | 26 | 1116 | 24 | 2 | 8.3333 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | * | 97.8100 | 97.5410 | 98.0804 | 98.3346 | 2142 | 54 | 2146 | 42 | 15 | 35.7143 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | het | 97.8105 | 96.8680 | 98.7716 | 82.6711 | 2165 | 70 | 2171 | 27 | 4 | 14.8148 | |
| gduggal-snapvard | SNP | ti | map_l125_m1_e0 | homalt | 97.8107 | 95.9258 | 99.7712 | 66.1153 | 10595 | 450 | 10464 | 24 | 19 | 79.1667 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.8109 | 99.7103 | 95.9825 | 45.9159 | 10327 | 30 | 10321 | 432 | 429 | 99.3056 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | homalt | 97.8112 | 96.1775 | 99.5014 | 78.2474 | 5787 | 230 | 5787 | 29 | 7 | 24.1379 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.8115 | 95.9651 | 99.7303 | 78.4840 | 4067 | 171 | 4068 | 11 | 1 | 9.0909 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | * | 97.8118 | 95.9465 | 99.7510 | 83.9867 | 4805 | 203 | 4808 | 12 | 7 | 58.3333 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | het | 97.8128 | 97.8626 | 97.7631 | 87.3293 | 1923 | 42 | 1923 | 44 | 28 | 63.6364 | |
| hfeng-pmm2 | INDEL | * | map_l125_m2_e1 | het | 97.8130 | 98.2955 | 97.3352 | 88.8707 | 1384 | 24 | 1388 | 38 | 3 | 7.8947 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8131 | 97.1129 | 98.5235 | 67.3246 | 740 | 22 | 734 | 11 | 10 | 90.9091 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.8135 | 96.1864 | 99.4965 | 31.6116 | 908 | 36 | 988 | 5 | 5 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.8135 | 96.1864 | 99.4965 | 31.6116 | 908 | 36 | 988 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.8136 | 95.7207 | 100.0000 | 80.1285 | 425 | 19 | 402 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8137 | 96.5992 | 99.0592 | 63.6797 | 6107 | 215 | 6107 | 58 | 48 | 82.7586 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8137 | 96.5992 | 99.0592 | 63.6797 | 6107 | 215 | 6107 | 58 | 48 | 82.7586 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.8138 | 96.2869 | 99.3900 | 32.9111 | 6431 | 248 | 13686 | 84 | 81 | 96.4286 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | * | 97.8142 | 97.2826 | 98.3516 | 95.3737 | 179 | 5 | 179 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | * | 97.8142 | 97.4308 | 98.2005 | 87.3865 | 493 | 13 | 764 | 14 | 8 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | het | 97.8147 | 96.1145 | 99.5761 | 59.9585 | 4230 | 171 | 4228 | 18 | 3 | 16.6667 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.8154 | 96.2235 | 99.4609 | 53.5902 | 1860 | 73 | 1845 | 10 | 10 | 100.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e1 | homalt | 97.8156 | 95.9417 | 99.7641 | 75.2443 | 10993 | 465 | 10994 | 26 | 14 | 53.8462 | |
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | * | 97.8160 | 96.6013 | 99.0617 | 92.0849 | 739 | 26 | 739 | 7 | 3 | 42.8571 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.8162 | 96.8548 | 98.7969 | 68.2925 | 3449 | 112 | 3449 | 42 | 28 | 66.6667 | |
| qzeng-custom | INDEL | * | HG002complexvar | het | 97.8163 | 97.7928 | 97.8398 | 56.2530 | 45192 | 1020 | 49233 | 1087 | 393 | 36.1546 | |
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.8165 | 99.8119 | 95.8994 | 55.8743 | 10083 | 19 | 10103 | 432 | 262 | 60.6481 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m1_e0 | * | 97.8166 | 95.7265 | 100.0000 | 88.0342 | 112 | 5 | 112 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m1_e0 | * | 97.8166 | 95.7265 | 100.0000 | 90.2012 | 112 | 5 | 112 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.8166 | 97.1098 | 98.5337 | 67.5856 | 336 | 10 | 336 | 5 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 94.8158 | 112 | 3 | 112 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 94.7441 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 95.1136 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m1_e0 | * | 97.8166 | 95.7265 | 100.0000 | 85.7516 | 112 | 5 | 109 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.8168 | 95.7514 | 99.9731 | 60.5697 | 14762 | 655 | 14877 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | * | het | 97.8168 | 99.3036 | 96.3739 | 78.4222 | 3137 | 22 | 2897 | 109 | 66 | 60.5505 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.8170 | 99.3884 | 96.2946 | 56.5927 | 27788 | 171 | 27079 | 1042 | 134 | 12.8599 | |
| anovak-vg | SNP | * | segdup | * | 97.8173 | 97.8231 | 97.8116 | 92.2860 | 27456 | 611 | 27219 | 609 | 236 | 38.7521 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | * | 97.8174 | 97.4762 | 98.1609 | 89.8565 | 7686 | 199 | 7686 | 144 | 38 | 26.3889 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.8177 | 96.1933 | 99.4980 | 48.4397 | 21403 | 847 | 21404 | 108 | 89 | 82.4074 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8177 | 99.4251 | 96.2614 | 56.7778 | 6053 | 35 | 6025 | 234 | 108 | 46.1538 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8185 | 95.8304 | 99.8909 | 57.5027 | 5493 | 239 | 5494 | 6 | 4 | 66.6667 | |