PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66801-66850 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.7064 | 96.3801 | 99.0698 | 91.1194 | 213 | 8 | 213 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | ti | HG002complexvar | het | 97.7064 | 97.0801 | 98.3410 | 19.6959 | 305575 | 9191 | 306161 | 5165 | 589 | 11.4037 | |
| cchapple-custom | SNP | ti | map_l100_m1_e0 | * | 97.7073 | 97.6424 | 97.7722 | 66.9622 | 46801 | 1130 | 46783 | 1066 | 270 | 25.3283 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7075 | 95.5178 | 100.0000 | 35.7483 | 1236 | 58 | 1348 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.7076 | 97.2927 | 98.1261 | 84.3425 | 575 | 16 | 576 | 11 | 2 | 18.1818 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.7077 | 96.0166 | 99.4595 | 54.9659 | 1856 | 77 | 1840 | 10 | 10 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.7078 | 96.2897 | 99.1684 | 59.0884 | 8097 | 312 | 8109 | 68 | 56 | 82.3529 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.7079 | 97.3724 | 98.0457 | 60.9578 | 1297 | 35 | 2358 | 47 | 42 | 89.3617 | |
| ckim-vqsr | INDEL | I16_PLUS | * | homalt | 97.7080 | 99.6797 | 95.8128 | 71.8495 | 1556 | 5 | 1556 | 68 | 67 | 98.5294 | |
| ckim-gatk | INDEL | I16_PLUS | * | homalt | 97.7080 | 99.6797 | 95.8128 | 71.8495 | 1556 | 5 | 1556 | 68 | 67 | 98.5294 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | * | 97.7081 | 98.0806 | 97.3384 | 87.7968 | 1533 | 30 | 1536 | 42 | 9 | 21.4286 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.7082 | 95.6585 | 99.8477 | 51.9462 | 3305 | 150 | 3279 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.7083 | 96.1066 | 99.3644 | 68.5333 | 469 | 19 | 469 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7089 | 95.5204 | 100.0000 | 63.1123 | 5672 | 266 | 5708 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | segdup | het | 97.7090 | 96.7914 | 98.6442 | 84.9489 | 11644 | 386 | 11641 | 160 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7091 | 96.6601 | 98.7812 | 70.7632 | 29462 | 1018 | 29015 | 358 | 247 | 68.9944 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7091 | 96.6601 | 98.7812 | 70.7632 | 29462 | 1018 | 29015 | 358 | 247 | 68.9944 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e0 | * | 97.7096 | 95.7641 | 99.7358 | 83.5094 | 7551 | 334 | 7551 | 20 | 10 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.7097 | 96.3304 | 99.1289 | 64.0826 | 5119 | 195 | 5121 | 45 | 38 | 84.4444 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.7099 | 100.0000 | 95.5224 | 44.4751 | 192 | 0 | 192 | 9 | 8 | 88.8889 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | het | 97.7099 | 96.9697 | 98.4615 | 96.4364 | 64 | 2 | 64 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e1 | het | 97.7099 | 96.9697 | 98.4615 | 96.5608 | 64 | 2 | 64 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 97.7099 | 95.5224 | 100.0000 | 85.2874 | 64 | 3 | 64 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 97.7099 | 95.5224 | 100.0000 | 87.3016 | 64 | 3 | 64 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7103 | 95.9230 | 99.5655 | 64.4709 | 8917 | 379 | 8936 | 39 | 38 | 97.4359 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.7103 | 96.0354 | 99.4447 | 23.8949 | 6613 | 273 | 6626 | 37 | 36 | 97.2973 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | het | 97.7103 | 97.2707 | 98.1540 | 83.4501 | 2174 | 61 | 2180 | 41 | 18 | 43.9024 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | * | 97.7109 | 97.7273 | 97.6945 | 90.0086 | 172 | 4 | 339 | 8 | 5 | 62.5000 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e0 | * | 97.7110 | 97.8206 | 97.6017 | 69.6113 | 72352 | 1612 | 72358 | 1778 | 689 | 38.7514 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | * | 97.7114 | 95.8874 | 99.6061 | 77.1094 | 1772 | 76 | 1770 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | I1_5 | map_siren | het | 97.7116 | 97.5610 | 97.8628 | 81.6928 | 1640 | 41 | 1740 | 38 | 12 | 31.5789 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | * | 97.7120 | 97.3635 | 98.0630 | 88.1407 | 517 | 14 | 810 | 16 | 10 | 62.5000 | |
| jli-custom | SNP | * | map_l250_m2_e1 | het | 97.7120 | 96.5426 | 98.9101 | 87.1957 | 5082 | 182 | 5082 | 56 | 24 | 42.8571 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.7124 | 95.5272 | 100.0000 | 30.1402 | 299 | 14 | 299 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.7124 | 95.5272 | 100.0000 | 30.1402 | 299 | 14 | 299 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.7128 | 97.1052 | 98.3282 | 43.4107 | 3757 | 112 | 11704 | 199 | 182 | 91.4573 | |
| ciseli-custom | SNP | tv | segdup | homalt | 97.7133 | 99.2897 | 96.1862 | 90.1152 | 3215 | 23 | 3203 | 127 | 72 | 56.6929 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.7137 | 96.5174 | 98.9399 | 71.3273 | 582 | 21 | 560 | 6 | 4 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7138 | 96.0100 | 99.4792 | 68.9069 | 385 | 16 | 382 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | * | 97.7139 | 95.7932 | 99.7133 | 83.6180 | 7651 | 336 | 7651 | 22 | 11 | 50.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7140 | 95.9777 | 99.5142 | 33.0521 | 6538 | 274 | 6555 | 32 | 32 | 100.0000 | |
| cchapple-custom | SNP | * | map_l125_m0_e0 | homalt | 97.7145 | 95.5453 | 99.9844 | 64.7518 | 6413 | 299 | 6411 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.7147 | 97.4166 | 98.0146 | 32.9344 | 3884 | 103 | 3900 | 79 | 74 | 93.6709 | |
| ckim-dragen | SNP | * | map_l125_m1_e0 | het | 97.7148 | 98.9469 | 96.5131 | 76.8910 | 28093 | 299 | 28094 | 1015 | 88 | 8.6700 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7158 | 97.4490 | 97.9841 | 76.9231 | 2101 | 55 | 2090 | 43 | 21 | 48.8372 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.7159 | 97.8795 | 97.5528 | 69.2597 | 1754 | 38 | 1754 | 44 | 33 | 75.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_siren | * | 97.7160 | 96.6601 | 98.7952 | 83.3612 | 492 | 17 | 492 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.7162 | 98.8842 | 96.5753 | 51.3333 | 709 | 8 | 705 | 25 | 23 | 92.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.7165 | 97.1074 | 98.3333 | 91.6464 | 235 | 7 | 236 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | homalt | 97.7169 | 98.1651 | 97.2727 | 94.8187 | 107 | 2 | 107 | 3 | 2 | 66.6667 | |