PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66201-66250 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.7507 | 20 | 1 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.4233 | 20 | 1 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 97.5610 | 100.0000 | 95.2381 | 99.3365 | 20 | 0 | 20 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 92.5512 | 40 | 2 | 40 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.2693 | 20 | 1 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9875 | 20 | 1 | 20 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5610 | 96.9697 | 98.1595 | 91.0341 | 160 | 5 | 160 | 3 | 1 | 33.3333 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 97.2918 | 40 | 2 | 40 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l100_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 72.7891 | 40 | 2 | 40 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5610 | 96.9697 | 98.1595 | 91.0734 | 160 | 5 | 160 | 3 | 1 | 33.3333 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 72.7891 | 40 | 2 | 40 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_siren | hetalt | 97.5610 | 95.2381 | 100.0000 | 90.8987 | 80 | 4 | 80 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | segdup | het | 97.5610 | 96.3855 | 98.7654 | 93.9052 | 80 | 3 | 80 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 97.3009 | 40 | 2 | 40 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.5610 | 95.2381 | 100.0000 | 39.3939 | 20 | 1 | 20 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.5610 | 97.5610 | 97.5610 | 91.2206 | 40 | 1 | 40 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 93.3775 | 40 | 2 | 40 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9495 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.6427 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 88.4837 | 120 | 6 | 120 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.5626 | 95.3621 | 99.8669 | 70.0866 | 3002 | 146 | 3002 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.5627 | 95.6563 | 99.5467 | 33.3070 | 10020 | 455 | 10102 | 46 | 45 | 97.8261 | |
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.5636 | 99.5347 | 95.6691 | 57.4517 | 10055 | 47 | 10073 | 456 | 383 | 83.9912 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5637 | 96.6141 | 98.5322 | 74.8332 | 2083 | 73 | 2081 | 31 | 8 | 25.8065 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e1 | * | 97.5638 | 95.9694 | 99.2120 | 85.3515 | 1381 | 58 | 1385 | 11 | 1 | 9.0909 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | * | 97.5647 | 98.0226 | 97.1111 | 71.6649 | 24538 | 495 | 24539 | 730 | 232 | 31.7808 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | * | 97.5651 | 95.5075 | 99.7133 | 82.6147 | 2785 | 131 | 2782 | 8 | 3 | 37.5000 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | het | 97.5662 | 98.0411 | 97.0958 | 88.5957 | 1001 | 20 | 1003 | 30 | 4 | 13.3333 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.5673 | 97.5168 | 97.6178 | 66.9009 | 1885 | 48 | 1885 | 46 | 46 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | het | 97.5684 | 98.1132 | 97.0297 | 89.2267 | 104 | 2 | 196 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | * | 97.5703 | 97.4708 | 97.6699 | 99.3659 | 501 | 13 | 503 | 12 | 4 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m0_e0 | * | 97.5715 | 96.3168 | 98.8593 | 76.8994 | 523 | 20 | 520 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | * | het | 97.5719 | 96.3280 | 98.8483 | 63.0112 | 3043 | 116 | 3004 | 35 | 15 | 42.8571 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 97.5720 | 97.0968 | 98.0519 | 89.3683 | 301 | 9 | 302 | 6 | 2 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.5723 | 95.7711 | 99.4425 | 60.5281 | 2310 | 102 | 2319 | 13 | 8 | 61.5385 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.5724 | 99.2360 | 95.9638 | 73.1297 | 1169 | 9 | 1165 | 49 | 49 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.5725 | 99.8788 | 95.3704 | 71.6070 | 824 | 1 | 824 | 40 | 39 | 97.5000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.5725 | 99.8788 | 95.3704 | 71.6070 | 824 | 1 | 824 | 40 | 39 | 97.5000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.5725 | 99.8788 | 95.3704 | 71.6070 | 824 | 1 | 824 | 40 | 39 | 97.5000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.5725 | 99.8788 | 95.3704 | 71.6070 | 824 | 1 | 824 | 40 | 39 | 97.5000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.5725 | 99.8788 | 95.3704 | 71.8658 | 824 | 1 | 824 | 40 | 38 | 95.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.5725 | 99.8788 | 95.3704 | 71.8658 | 824 | 1 | 824 | 40 | 38 | 95.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.5728 | 98.9160 | 96.2656 | 77.1021 | 365 | 4 | 464 | 18 | 18 | 100.0000 | |
| gduggal-snapvard | SNP | ti | map_l150_m1_e0 | homalt | 97.5731 | 95.5507 | 99.6829 | 71.1266 | 7001 | 326 | 6916 | 22 | 18 | 81.8182 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.5740 | 96.7742 | 98.3871 | 84.9148 | 60 | 2 | 61 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | func_cds | * | 97.5741 | 100.0000 | 95.2632 | 47.8022 | 180 | 0 | 181 | 9 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | func_cds | * | 97.5741 | 100.0000 | 95.2632 | 47.6584 | 180 | 0 | 181 | 9 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.5748 | 95.9732 | 99.2308 | 77.4697 | 143 | 6 | 129 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m0_e0 | het | 97.5753 | 96.8750 | 98.2857 | 85.5848 | 186 | 6 | 344 | 6 | 3 | 50.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.5756 | 96.9298 | 98.2301 | 91.3542 | 221 | 7 | 222 | 4 | 3 | 75.0000 | |