PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66051-66100 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.5318 | 97.5161 | 97.5474 | 64.9131 | 2120 | 54 | 2108 | 53 | 24 | 45.2830 | |
| rpoplin-dv42 | SNP | ti | map_l250_m0_e0 | het | 97.5322 | 97.3233 | 97.7419 | 92.5223 | 909 | 25 | 909 | 21 | 11 | 52.3810 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5327 | 97.1098 | 97.9592 | 67.3333 | 336 | 10 | 336 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | I1_5 | func_cds | het | 97.5336 | 98.3051 | 96.7742 | 42.0561 | 58 | 1 | 60 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.5340 | 95.6140 | 99.5327 | 83.1893 | 218 | 10 | 213 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5340 | 96.1089 | 99.0020 | 86.1869 | 494 | 20 | 496 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.5341 | 99.1135 | 96.0043 | 33.9044 | 559 | 5 | 4445 | 185 | 173 | 93.5135 | |
| gduggal-snapplat | SNP | tv | HG002complexvar | * | 97.5342 | 96.7281 | 98.3538 | 26.8142 | 238101 | 8054 | 238450 | 3991 | 673 | 16.8629 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | het | 97.5348 | 97.2930 | 97.7778 | 83.2980 | 1222 | 34 | 1232 | 28 | 2 | 7.1429 | |
| hfeng-pmm2 | INDEL | I16_PLUS | * | * | 97.5355 | 96.5031 | 98.5902 | 69.5601 | 6154 | 223 | 6154 | 88 | 61 | 69.3182 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.5355 | 100.0000 | 95.1895 | 73.1086 | 653 | 0 | 653 | 33 | 32 | 96.9697 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | * | 97.5357 | 95.4545 | 99.7097 | 82.4960 | 2751 | 131 | 2748 | 8 | 3 | 37.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | het | 97.5364 | 97.2441 | 97.8304 | 85.6618 | 494 | 14 | 496 | 11 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5366 | 99.3299 | 95.8069 | 62.8145 | 2668 | 18 | 2719 | 119 | 1 | 0.8403 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.5368 | 96.9631 | 98.1174 | 69.9601 | 894 | 28 | 886 | 17 | 14 | 82.3529 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.5369 | 96.2865 | 98.8203 | 42.9016 | 1089 | 42 | 1089 | 13 | 9 | 69.2308 | |
| ckim-dragen | INDEL | I6_15 | map_siren | * | 97.5369 | 97.3770 | 97.6974 | 85.1053 | 297 | 8 | 297 | 7 | 4 | 57.1429 | |
| ckim-gatk | SNP | ti | HG002complexvar | hetalt | 97.5369 | 95.6522 | 99.4975 | 39.5137 | 198 | 9 | 198 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.5369 | 96.2764 | 98.8308 | 48.6037 | 2870 | 111 | 2874 | 34 | 25 | 73.5294 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.5376 | 95.9677 | 99.1597 | 89.6970 | 119 | 5 | 118 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.5381 | 97.5357 | 97.5405 | 74.8248 | 1504 | 38 | 1507 | 38 | 24 | 63.1579 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | * | 97.5383 | 99.7218 | 95.4485 | 79.1599 | 11470 | 32 | 11408 | 544 | 14 | 2.5735 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.5385 | 96.3504 | 98.7562 | 71.8093 | 396 | 15 | 397 | 5 | 5 | 100.0000 | |
| qzeng-custom | SNP | tv | HG002compoundhet | het | 97.5388 | 97.4321 | 97.6458 | 58.3399 | 4553 | 120 | 5641 | 136 | 28 | 20.5882 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.5390 | 95.2102 | 99.9846 | 25.1466 | 6500 | 327 | 6509 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | * | 97.5395 | 97.4460 | 97.6331 | 85.2014 | 496 | 13 | 495 | 12 | 2 | 16.6667 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5398 | 97.6812 | 97.3988 | 87.9694 | 337 | 8 | 337 | 9 | 2 | 22.2222 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.5399 | 97.9550 | 97.1282 | 57.0303 | 7233 | 151 | 7204 | 213 | 194 | 91.0798 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002complexvar | hetalt | 97.5400 | 95.2663 | 99.9249 | 72.3364 | 1288 | 64 | 1331 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | het | 97.5401 | 98.0947 | 96.9918 | 89.4930 | 3192 | 62 | 3192 | 99 | 2 | 2.0202 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e0 | het | 97.5401 | 97.0479 | 98.0373 | 72.8725 | 29718 | 904 | 29720 | 595 | 164 | 27.5630 | |
| jmaeng-gatk | INDEL | D16_PLUS | * | * | 97.5405 | 97.4499 | 97.6314 | 70.8962 | 6611 | 173 | 6595 | 160 | 119 | 74.3750 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.5405 | 96.0212 | 99.1085 | 32.5488 | 10305 | 427 | 10339 | 93 | 45 | 48.3871 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5407 | 96.4172 | 98.6907 | 74.9539 | 1211 | 45 | 1206 | 16 | 6 | 37.5000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.5410 | 95.2000 | 100.0000 | 30.0578 | 119 | 6 | 121 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | map_l100_m0_e0 | homalt | 97.5410 | 95.5077 | 99.6627 | 63.7532 | 11098 | 522 | 10932 | 37 | 28 | 75.6757 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.5410 | 97.5410 | 97.5410 | 68.6375 | 119 | 3 | 119 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.5410 | 95.2000 | 100.0000 | 29.2398 | 119 | 6 | 121 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5410 | 96.4067 | 98.7024 | 79.1406 | 1100 | 41 | 1217 | 16 | 12 | 75.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.5411 | 97.9111 | 97.1738 | 70.8692 | 2953 | 63 | 2957 | 86 | 7 | 8.1395 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.5412 | 99.3311 | 95.8146 | 61.4853 | 3861 | 26 | 3846 | 168 | 74 | 44.0476 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.5413 | 96.6355 | 98.4642 | 83.8745 | 517 | 18 | 577 | 9 | 9 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.5416 | 96.5596 | 98.5437 | 84.5866 | 421 | 15 | 406 | 6 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.5419 | 95.5335 | 99.6365 | 30.2678 | 10609 | 496 | 10690 | 39 | 38 | 97.4359 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5422 | 96.3636 | 98.7500 | 90.1356 | 159 | 6 | 158 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | * | * | 97.5429 | 96.3222 | 98.7949 | 47.4402 | 141348 | 5397 | 141168 | 1722 | 1190 | 69.1057 | |
| jmaeng-gatk | INDEL | D16_PLUS | * | het | 97.5431 | 99.0503 | 96.0810 | 78.7734 | 3129 | 30 | 2893 | 118 | 85 | 72.0339 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002complexvar | hetalt | 97.5431 | 95.3402 | 99.8501 | 71.8149 | 1289 | 63 | 1332 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.5432 | 96.7890 | 98.3092 | 83.9223 | 422 | 14 | 407 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | het | 97.5433 | 98.0903 | 97.0024 | 89.5913 | 3236 | 63 | 3236 | 100 | 2 | 2.0000 | |