PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64101-64150 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.0066 | 99.5228 | 94.6144 | 77.5514 | 16894 | 81 | 16918 | 963 | 436 | 45.2752 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.0071 | 94.2405 | 99.9409 | 41.4127 | 1669 | 102 | 1691 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.0075 | 95.3292 | 98.7460 | 27.5468 | 5184 | 254 | 5197 | 66 | 64 | 96.9697 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.0079 | 94.1896 | 100.0000 | 84.1944 | 308 | 19 | 309 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e0 | het | 97.0080 | 97.3518 | 96.6667 | 80.9840 | 772 | 21 | 1218 | 42 | 28 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | * | * | 97.0081 | 96.0953 | 97.9383 | 71.0190 | 6128 | 249 | 6128 | 129 | 82 | 63.5659 | |
| ckim-isaac | INDEL | * | segdup | homalt | 97.0085 | 94.5833 | 99.5614 | 90.4632 | 908 | 52 | 908 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | het | 97.0089 | 97.1644 | 96.8539 | 67.7653 | 1679 | 49 | 1724 | 56 | 27 | 48.2143 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.0093 | 96.1111 | 97.9245 | 77.2337 | 519 | 21 | 519 | 11 | 6 | 54.5455 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.0097 | 97.9592 | 96.0784 | 82.1678 | 48 | 1 | 49 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0103 | 94.5783 | 99.5706 | 64.1494 | 8792 | 504 | 8811 | 38 | 38 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002complexvar | hetalt | 97.0105 | 94.1946 | 100.0000 | 56.3370 | 1152 | 71 | 1192 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0122 | 94.5111 | 99.6491 | 66.8219 | 551 | 32 | 568 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.0123 | 94.7692 | 99.3641 | 23.2927 | 616 | 34 | 625 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | * | het | 97.0125 | 97.6891 | 96.3452 | 79.1579 | 3086 | 73 | 2847 | 108 | 74 | 68.5185 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.0127 | 99.1870 | 94.9318 | 60.8397 | 488 | 4 | 487 | 26 | 25 | 96.1538 | |
| eyeh-varpipe | INDEL | * | map_l125_m1_e0 | homalt | 97.0129 | 97.1311 | 96.8950 | 86.7449 | 711 | 21 | 1061 | 34 | 31 | 91.1765 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.0137 | 98.0306 | 96.0177 | 76.2105 | 896 | 18 | 868 | 36 | 5 | 13.8889 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.0138 | 96.9458 | 97.0818 | 54.6044 | 10951 | 345 | 10945 | 329 | 249 | 75.6839 | |
| ckim-dragen | INDEL | I1_5 | HG002compoundhet | het | 97.0139 | 98.3529 | 95.7108 | 85.3685 | 836 | 14 | 781 | 35 | 32 | 91.4286 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.0142 | 96.9697 | 97.0588 | 74.4361 | 32 | 1 | 33 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 97.0144 | 98.7107 | 95.3754 | 88.2617 | 1914 | 25 | 1918 | 93 | 8 | 8.6022 | |
| ckim-dragen | INDEL | * | map_l100_m2_e1 | * | 97.0145 | 97.3908 | 96.6411 | 87.1665 | 3658 | 98 | 3654 | 127 | 20 | 15.7480 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 82.5459 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 83.3542 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0149 | 100.0000 | 94.2029 | 85.9470 | 2 | 0 | 65 | 4 | 3 | 75.0000 | |
| qzeng-custom | SNP | ti | HG002complexvar | hetalt | 97.0149 | 94.2029 | 100.0000 | 39.1447 | 195 | 12 | 185 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.0149 | 94.2029 | 100.0000 | 83.5476 | 65 | 4 | 64 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 97.0149 | 95.5882 | 98.4848 | 97.0014 | 65 | 3 | 65 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | * | 97.0156 | 97.8261 | 96.2185 | 95.0365 | 180 | 4 | 229 | 9 | 4 | 44.4444 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | het | 97.0162 | 97.7840 | 96.2604 | 84.6993 | 2780 | 63 | 2780 | 108 | 8 | 7.4074 | |
| ndellapenna-hhga | INDEL | I1_5 | * | hetalt | 97.0167 | 94.8280 | 99.3087 | 62.5367 | 10616 | 579 | 10630 | 74 | 67 | 90.5405 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.0172 | 94.5909 | 99.5711 | 30.5429 | 13273 | 759 | 13466 | 58 | 56 | 96.5517 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.0173 | 99.3569 | 94.7853 | 69.0702 | 309 | 2 | 309 | 17 | 16 | 94.1176 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.0178 | 94.3253 | 99.8684 | 24.7525 | 748 | 45 | 759 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | het | 97.0183 | 96.4401 | 97.6035 | 87.5509 | 298 | 11 | 448 | 11 | 5 | 45.4545 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 97.0190 | 97.2826 | 96.7568 | 95.0508 | 179 | 5 | 179 | 6 | 1 | 16.6667 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.0190 | 98.4844 | 95.5966 | 46.9536 | 6173 | 95 | 6209 | 286 | 37 | 12.9371 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | * | 97.0194 | 97.3346 | 96.7063 | 87.6399 | 1059 | 29 | 1057 | 36 | 5 | 13.8889 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0197 | 98.8406 | 95.2646 | 88.9606 | 341 | 4 | 342 | 17 | 1 | 5.8824 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | het | 97.0200 | 96.4684 | 97.5779 | 93.5180 | 519 | 19 | 564 | 14 | 8 | 57.1429 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0207 | 95.3171 | 98.7864 | 34.4210 | 6493 | 319 | 6512 | 80 | 77 | 96.2500 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0210 | 94.2544 | 99.9549 | 27.4378 | 4380 | 267 | 4433 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | func_cds | homalt | 97.0213 | 95.7983 | 98.2759 | 29.2683 | 114 | 5 | 114 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | * | 97.0226 | 96.4427 | 97.6096 | 87.2589 | 488 | 18 | 490 | 12 | 1 | 8.3333 | |
| jlack-gatk | SNP | * | map_l100_m1_e0 | * | 97.0238 | 99.1147 | 95.0193 | 74.0812 | 71762 | 641 | 71751 | 3761 | 290 | 7.7107 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.0242 | 95.4545 | 98.6464 | 64.6742 | 588 | 28 | 583 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.0246 | 94.5657 | 99.6148 | 24.0847 | 6456 | 371 | 6465 | 25 | 25 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m0_e0 | * | 97.0246 | 98.0392 | 96.0307 | 93.0983 | 750 | 15 | 750 | 31 | 5 | 16.1290 | |
| bgallagher-sentieon | INDEL | I6_15 | * | homalt | 97.0258 | 99.8718 | 94.3376 | 54.5892 | 6231 | 8 | 6231 | 374 | 371 | 99.1979 | |