PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63951-64000 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D6_15 | tech_badpromoters | * | 96.9697 | 94.1176 | 100.0000 | 48.3871 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m2_e0 | het | 96.9697 | 100.0000 | 94.1176 | 97.5362 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m2_e1 | het | 96.9697 | 100.0000 | 94.1176 | 97.5818 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m0_e0 | * | 96.9697 | 100.0000 | 94.1176 | 95.6242 | 32 | 0 | 32 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e0 | * | 96.9697 | 97.5610 | 96.3855 | 94.3422 | 80 | 2 | 80 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | het | 96.9697 | 100.0000 | 94.1176 | 90.2857 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | het | 96.9697 | 100.0000 | 94.1176 | 90.4494 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | tech_badpromoters | * | 96.9697 | 94.1176 | 100.0000 | 54.2857 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m0_e0 | het | 96.9697 | 94.1176 | 100.0000 | 95.2522 | 16 | 1 | 16 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 87.1859 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.9697 | 95.7265 | 98.2456 | 91.4286 | 112 | 5 | 112 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 96.9697 | 94.1176 | 100.0000 | 89.5765 | 32 | 2 | 32 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.4400 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 96.9697 | 94.1176 | 100.0000 | 99.4940 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 88.1119 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m1_e0 | * | 96.9697 | 100.0000 | 94.1176 | 95.6633 | 15 | 0 | 16 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m2_e0 | * | 96.9697 | 100.0000 | 94.1176 | 96.2138 | 15 | 0 | 16 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 96.9697 | 100.0000 | 94.1176 | 96.2555 | 15 | 0 | 16 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 91.0377 | 128 | 3 | 128 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9697 | 95.5224 | 98.4615 | 89.3791 | 64 | 3 | 64 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 94.2400 | 48 | 3 | 36 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 96.9697 | 94.1176 | 100.0000 | 92.8251 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m0_e0 | het | 96.9697 | 94.1176 | 100.0000 | 93.4156 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e0 | * | 96.9697 | 96.5517 | 97.3913 | 88.8023 | 112 | 4 | 112 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e1 | * | 96.9697 | 96.5517 | 97.3913 | 89.0580 | 112 | 4 | 112 | 3 | 0 | 0.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.0962 | 16 | 1 | 16 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.9697 | 96.9697 | 96.9697 | 85.2018 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.9697 | 96.9697 | 96.9697 | 86.8000 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.9697 | 96.9697 | 96.9697 | 86.9565 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 86.7188 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.2835 | 16 | 1 | 16 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 87.7990 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.2556 | 16 | 1 | 16 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 96.9697 | 94.1176 | 100.0000 | 90.9259 | 48 | 3 | 49 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 96.9697 | 100.0000 | 94.1176 | 83.9623 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 89.0445 | 128 | 3 | 128 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 80.2326 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 79.0123 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.9697 | 94.1176 | 100.0000 | 25.6765 | 3792 | 237 | 3818 | 0 | 0 | ||
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 96.9697 | 94.1176 | 100.0000 | 99.4528 | 16 | 1 | 16 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 78.7500 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | tech_badpromoters | * | 96.9697 | 94.1176 | 100.0000 | 51.5152 | 16 | 1 | 16 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 96.9697 | 100.0000 | 94.1176 | 78.2051 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.9697 | 94.1176 | 100.0000 | 53.1792 | 80 | 5 | 81 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 82.2917 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e1 | het | 96.9708 | 96.4374 | 97.5102 | 78.4083 | 18407 | 680 | 18407 | 470 | 150 | 31.9149 | |