PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62351-62400 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D1_5 | * | hetalt | 96.5103 | 93.6457 | 99.5557 | 62.7258 | 9594 | 651 | 9636 | 43 | 43 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.5108 | 94.0299 | 99.1263 | 61.5359 | 2268 | 144 | 2269 | 20 | 15 | 75.0000 | |
| jpowers-varprowl | SNP | ti | tech_badpromoters | * | 96.5116 | 97.6471 | 95.4023 | 51.1236 | 83 | 2 | 83 | 4 | 1 | 25.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 96.5116 | 97.6471 | 95.4023 | 94.2039 | 83 | 2 | 83 | 4 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.5116 | 93.2584 | 100.0000 | 74.1835 | 166 | 12 | 166 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5127 | 95.9108 | 97.1223 | 74.2593 | 258 | 11 | 270 | 8 | 3 | 37.5000 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e1 | homalt | 96.5134 | 93.6575 | 99.5490 | 88.2016 | 886 | 60 | 883 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5138 | 97.4194 | 95.6250 | 82.3982 | 151 | 4 | 153 | 7 | 5 | 71.4286 | |
| astatham-gatk | INDEL | * | map_l125_m2_e0 | * | 96.5138 | 95.1275 | 97.9410 | 89.1008 | 2089 | 107 | 2093 | 44 | 9 | 20.4545 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 96.5143 | 94.0789 | 99.0790 | 85.3464 | 1287 | 81 | 1291 | 12 | 4 | 33.3333 | |
| ckim-isaac | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.5147 | 94.2784 | 98.8597 | 54.0704 | 52448 | 3183 | 52797 | 609 | 355 | 58.2923 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | * | 96.5147 | 94.1704 | 98.9788 | 84.7782 | 1260 | 78 | 1260 | 13 | 3 | 23.0769 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5155 | 98.1707 | 94.9153 | 85.9857 | 161 | 3 | 112 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.5155 | 99.7628 | 93.4730 | 54.4025 | 6728 | 16 | 6559 | 458 | 33 | 7.2052 | |
| ckim-gatk | INDEL | D1_5 | * | hetalt | 96.5155 | 93.6554 | 99.5558 | 62.7234 | 9595 | 650 | 9637 | 43 | 43 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5155 | 98.1707 | 94.9153 | 85.7831 | 161 | 3 | 112 | 6 | 6 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 96.5155 | 96.0154 | 97.0207 | 90.1102 | 747 | 31 | 749 | 23 | 5 | 21.7391 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | * | 96.5157 | 95.8478 | 97.1930 | 90.6741 | 277 | 12 | 277 | 8 | 3 | 37.5000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.5157 | 97.8799 | 95.1890 | 68.7433 | 277 | 6 | 277 | 14 | 14 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m0_e0 | * | 96.5169 | 97.3923 | 95.6570 | 93.0361 | 859 | 23 | 859 | 39 | 4 | 10.2564 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.5171 | 99.1298 | 94.0386 | 44.7974 | 2734 | 24 | 2729 | 173 | 47 | 27.1676 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.5174 | 95.0980 | 97.9798 | 60.8696 | 97 | 5 | 97 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.5177 | 93.9068 | 99.2780 | 66.5459 | 262 | 17 | 275 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.5181 | 93.7722 | 99.4296 | 26.3580 | 7664 | 509 | 7670 | 44 | 43 | 97.7273 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.5185 | 97.5124 | 95.5446 | 88.8274 | 196 | 5 | 193 | 9 | 1 | 11.1111 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.5189 | 98.9555 | 94.1994 | 86.2906 | 1800 | 19 | 1559 | 96 | 69 | 71.8750 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.5189 | 98.9555 | 94.1994 | 86.2906 | 1800 | 19 | 1559 | 96 | 69 | 71.8750 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.5190 | 93.9068 | 99.2806 | 63.1788 | 262 | 17 | 276 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.5196 | 93.9394 | 99.2455 | 33.2429 | 1519 | 98 | 1710 | 13 | 13 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.5196 | 93.9394 | 99.2455 | 33.2429 | 1519 | 98 | 1710 | 13 | 13 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.5198 | 93.2738 | 100.0000 | 24.0209 | 3758 | 271 | 3783 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l250_m2_e0 | * | 96.5204 | 96.3746 | 96.6667 | 95.5291 | 319 | 12 | 319 | 11 | 4 | 36.3636 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.5210 | 93.9856 | 99.1970 | 53.9957 | 2344 | 150 | 2347 | 19 | 2 | 10.5263 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.5213 | 93.3654 | 99.8981 | 44.6324 | 2913 | 207 | 2942 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 96.5214 | 98.0315 | 95.0570 | 92.5273 | 498 | 10 | 500 | 26 | 1 | 3.8462 | |
| ckim-isaac | INDEL | * | * | het | 96.5214 | 95.9358 | 97.1142 | 48.5384 | 186243 | 7890 | 184953 | 5496 | 3918 | 71.2882 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e1 | het | 96.5215 | 96.2145 | 96.8304 | 89.9905 | 1220 | 48 | 1222 | 40 | 4 | 10.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | homalt | 96.5217 | 95.6897 | 97.3684 | 95.6322 | 111 | 5 | 111 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | het | 96.5217 | 100.0000 | 93.2773 | 95.6962 | 111 | 0 | 111 | 8 | 1 | 12.5000 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 96.5217 | 95.6897 | 97.3684 | 90.3635 | 111 | 5 | 111 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 96.5217 | 95.6897 | 97.3684 | 90.5863 | 111 | 5 | 111 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | * | map_l250_m2_e0 | homalt | 96.5217 | 96.5217 | 96.5217 | 94.9782 | 111 | 4 | 111 | 4 | 4 | 100.0000 | |
| cchapple-custom | SNP | tv | tech_badpromoters | * | 96.5228 | 97.2222 | 95.8333 | 57.6471 | 70 | 2 | 69 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m1_e0 | het | 96.5230 | 96.3606 | 96.6860 | 89.4465 | 1165 | 44 | 1167 | 40 | 4 | 10.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.5231 | 98.6023 | 94.5298 | 62.0425 | 12346 | 175 | 12304 | 712 | 693 | 97.3315 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.5242 | 99.6649 | 93.5754 | 71.7749 | 2677 | 9 | 2680 | 184 | 9 | 4.8913 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.5247 | 93.9357 | 99.2605 | 36.0262 | 1549 | 100 | 1745 | 13 | 13 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_siren | homalt | 96.5251 | 96.1538 | 96.8992 | 78.3557 | 125 | 5 | 125 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.5254 | 93.7213 | 99.5026 | 29.5295 | 7553 | 506 | 7601 | 38 | 37 | 97.3684 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5254 | 93.7213 | 99.5026 | 29.5295 | 7553 | 506 | 7601 | 38 | 37 | 97.3684 | |