PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62001-62050 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | ti | HG002complexvar | * | 96.3915 | 97.0905 | 95.7026 | 18.7897 | 493644 | 14793 | 488642 | 21942 | 5540 | 25.2484 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.3915 | 97.1904 | 95.6056 | 75.0334 | 934 | 27 | 892 | 41 | 38 | 92.6829 | |
| ckim-vqsr | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.3917 | 93.3580 | 99.6293 | 58.1709 | 14393 | 1024 | 14513 | 54 | 54 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.3917 | 97.6114 | 95.2022 | 68.9543 | 47118 | 1153 | 98539 | 4966 | 2712 | 54.6114 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | het | 96.3919 | 97.9721 | 94.8619 | 74.2875 | 10339 | 214 | 10339 | 560 | 207 | 36.9643 | |
| gduggal-snapfb | SNP | ti | map_l125_m1_e0 | het | 96.3921 | 97.2572 | 95.5423 | 70.8639 | 17765 | 501 | 17768 | 829 | 394 | 47.5271 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | het | 96.3922 | 93.7063 | 99.2366 | 78.1667 | 134 | 9 | 130 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 96.3923 | 97.8261 | 95.0000 | 91.5730 | 45 | 1 | 57 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3927 | 94.1176 | 98.7805 | 57.2917 | 80 | 5 | 81 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3927 | 94.1176 | 98.7805 | 56.1497 | 80 | 5 | 81 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e1 | * | 96.3932 | 96.8966 | 95.8951 | 88.3455 | 843 | 27 | 841 | 36 | 7 | 19.4444 | |
| ckim-dragen | SNP | ti | map_l250_m2_e0 | het | 96.3935 | 97.2956 | 95.5080 | 91.3622 | 3166 | 88 | 3168 | 149 | 10 | 6.7114 | |
| cchapple-custom | SNP | tv | map_l100_m0_e0 | * | 96.3944 | 97.1220 | 95.6777 | 73.2738 | 10765 | 319 | 10758 | 486 | 83 | 17.0782 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.3952 | 94.2799 | 98.6075 | 61.7292 | 7928 | 481 | 7931 | 112 | 102 | 91.0714 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | homalt | 96.3955 | 95.1220 | 97.7035 | 92.1035 | 468 | 24 | 468 | 11 | 8 | 72.7273 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | het | 96.3955 | 97.6311 | 95.1907 | 86.7502 | 577 | 14 | 574 | 29 | 2 | 6.8966 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.3956 | 93.1863 | 99.8338 | 31.7550 | 2366 | 173 | 2403 | 4 | 4 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.3956 | 93.1863 | 99.8338 | 31.7550 | 2366 | 173 | 2403 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m1_e0 | het | 96.3964 | 96.3964 | 96.3964 | 95.2625 | 107 | 4 | 107 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.3970 | 97.7723 | 95.0598 | 71.0826 | 29801 | 679 | 29633 | 1540 | 1434 | 93.1169 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.3970 | 97.7723 | 95.0598 | 71.0826 | 29801 | 679 | 29633 | 1540 | 1434 | 93.1169 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m1_e0 | het | 96.3970 | 93.6214 | 99.3421 | 76.3363 | 455 | 31 | 453 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | map_l250_m1_e0 | * | 96.3982 | 95.8943 | 96.9074 | 89.5799 | 4391 | 188 | 4387 | 140 | 38 | 27.1429 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.3984 | 95.9444 | 96.8568 | 59.7281 | 828 | 35 | 832 | 27 | 25 | 92.5926 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3984 | 98.2332 | 94.6309 | 68.0258 | 278 | 5 | 282 | 16 | 15 | 93.7500 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3989 | 93.5484 | 99.4286 | 70.8333 | 174 | 12 | 174 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.3994 | 93.2746 | 99.7407 | 59.0297 | 1165 | 84 | 1154 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.3994 | 93.2746 | 99.7407 | 59.0297 | 1165 | 84 | 1154 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l150_m0_e0 | * | 96.3994 | 96.4981 | 96.3009 | 96.8271 | 496 | 18 | 781 | 30 | 19 | 63.3333 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4002 | 93.3232 | 99.6870 | 67.8894 | 615 | 44 | 637 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.4002 | 93.3232 | 99.6870 | 67.8894 | 615 | 44 | 637 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e1 | het | 96.4026 | 97.5325 | 95.2986 | 89.0022 | 751 | 19 | 750 | 37 | 3 | 8.1081 | |
| ckim-dragen | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 76.8966 | 67 | 5 | 67 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 78.1046 | 67 | 5 | 67 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 78.5256 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.7583 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.3846 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.1925 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | * | hetalt | 96.4031 | 93.0885 | 99.9625 | 39.0201 | 7960 | 591 | 8000 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4034 | 93.5484 | 99.4382 | 67.4589 | 174 | 12 | 177 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | het | 96.4036 | 99.2424 | 93.7226 | 78.7202 | 30390 | 232 | 30383 | 2035 | 176 | 8.6487 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4036 | 94.8289 | 98.0315 | 47.7581 | 1247 | 68 | 1245 | 25 | 21 | 84.0000 | |
| jmaeng-gatk | INDEL | D1_5 | HG002compoundhet | hetalt | 96.4037 | 93.4123 | 99.5930 | 58.4493 | 9543 | 673 | 9543 | 39 | 39 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | HG002compoundhet | homalt | 96.4038 | 94.2115 | 98.7006 | 34.6979 | 6966 | 428 | 6912 | 91 | 82 | 90.1099 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 96.4050 | 93.4087 | 99.6000 | 83.0048 | 496 | 35 | 498 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | * | hetalt | 96.4051 | 93.9092 | 99.0373 | 64.2371 | 9621 | 624 | 9670 | 94 | 88 | 93.6170 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 96.4056 | 97.2318 | 95.5932 | 92.0227 | 281 | 8 | 282 | 13 | 1 | 7.6923 | |
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.4056 | 93.3839 | 99.6294 | 58.1642 | 14397 | 1020 | 14517 | 54 | 54 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.4077 | 96.8613 | 95.9584 | 55.0491 | 27373 | 887 | 54846 | 2310 | 1901 | 82.2944 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e0 | het | 96.4087 | 94.3662 | 98.5417 | 86.5509 | 469 | 28 | 473 | 7 | 1 | 14.2857 | |