PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61001-61050 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D16_PLUS | * | hetalt | 96.0050 | 92.9126 | 99.3103 | 38.0720 | 1796 | 137 | 2016 | 14 | 14 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_siren | het | 96.0059 | 95.8042 | 96.2085 | 84.5308 | 137 | 6 | 203 | 8 | 2 | 25.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e0 | * | 96.0079 | 96.0682 | 95.9477 | 92.8545 | 733 | 30 | 734 | 31 | 4 | 12.9032 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.0080 | 93.7143 | 98.4169 | 35.2137 | 328 | 22 | 373 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e1 | * | 96.0083 | 96.7156 | 95.3112 | 86.9753 | 1119 | 38 | 1118 | 55 | 9 | 16.3636 | |
| ghariani-varprowl | SNP | ti | map_l250_m1_e0 | * | 96.0095 | 97.2046 | 94.8434 | 90.8840 | 4451 | 128 | 4451 | 242 | 52 | 21.4876 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.0096 | 95.7223 | 96.2986 | 71.4542 | 1544 | 69 | 1535 | 59 | 56 | 94.9153 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e0 | het | 96.0096 | 99.7465 | 92.5426 | 72.2574 | 15737 | 40 | 15549 | 1253 | 16 | 1.2769 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.0102 | 95.2734 | 96.7586 | 52.9962 | 5785 | 287 | 5791 | 194 | 179 | 92.2680 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 96.0116 | 93.0380 | 99.1817 | 48.3080 | 588 | 44 | 606 | 5 | 5 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e1 | * | 96.0118 | 97.5976 | 94.4767 | 96.0984 | 325 | 8 | 325 | 19 | 4 | 21.0526 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.0120 | 93.2677 | 98.9228 | 69.2605 | 568 | 41 | 551 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.0142 | 94.4383 | 97.6435 | 60.1906 | 2581 | 152 | 2569 | 62 | 59 | 95.1613 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.0150 | 95.3702 | 96.6686 | 70.3632 | 4882 | 237 | 4875 | 168 | 149 | 88.6905 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.0152 | 93.7848 | 98.3543 | 70.3629 | 2022 | 134 | 2032 | 34 | 5 | 14.7059 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.0159 | 93.8240 | 98.3126 | 56.1185 | 1109 | 73 | 1107 | 19 | 18 | 94.7368 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e1 | het | 96.0176 | 99.7490 | 92.5553 | 72.3251 | 15898 | 40 | 15702 | 1263 | 16 | 1.2668 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0184 | 92.3880 | 99.9457 | 61.4714 | 5486 | 452 | 5522 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e1 | het | 96.0187 | 97.1564 | 94.9074 | 95.5891 | 205 | 6 | 205 | 11 | 2 | 18.1818 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | het | 96.0199 | 95.5446 | 96.5000 | 90.5794 | 193 | 9 | 193 | 7 | 2 | 28.5714 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 96.0199 | 92.7885 | 99.4845 | 82.6009 | 193 | 15 | 193 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.0206 | 93.2787 | 98.9286 | 61.7804 | 4663 | 336 | 4617 | 50 | 35 | 70.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.0206 | 93.2787 | 98.9286 | 61.7804 | 4663 | 336 | 4617 | 50 | 35 | 70.0000 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e0 | homalt | 96.0216 | 93.3159 | 98.8889 | 83.3218 | 712 | 51 | 712 | 8 | 5 | 62.5000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.0217 | 94.2549 | 97.8560 | 49.0716 | 3675 | 224 | 8535 | 187 | 123 | 65.7754 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.0220 | 94.6281 | 97.4576 | 65.7475 | 229 | 13 | 230 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m1_e0 | homalt | 96.0236 | 93.4097 | 98.7879 | 81.0454 | 326 | 23 | 326 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m1_e0 | het | 96.0240 | 97.6013 | 94.4969 | 82.5992 | 1180 | 29 | 1202 | 70 | 7 | 10.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.0244 | 95.4725 | 96.5827 | 67.7509 | 36186 | 1716 | 36120 | 1278 | 1242 | 97.1831 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.0247 | 96.7157 | 95.3435 | 43.9443 | 4535 | 154 | 4607 | 225 | 89 | 39.5556 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.0249 | 95.0450 | 97.0252 | 86.7656 | 422 | 22 | 424 | 13 | 9 | 69.2308 | |
| qzeng-custom | INDEL | * | tech_badpromoters | * | 96.0263 | 96.0526 | 96.0000 | 50.9804 | 73 | 3 | 72 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 96.0274 | 98.7132 | 93.4839 | 90.1867 | 1074 | 14 | 1076 | 75 | 6 | 8.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 96.0274 | 98.7593 | 93.4426 | 89.0578 | 1194 | 15 | 1197 | 84 | 6 | 7.1429 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.0284 | 92.9570 | 99.3097 | 38.0196 | 1795 | 136 | 2014 | 14 | 14 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.0284 | 92.9570 | 99.3097 | 38.0196 | 1795 | 136 | 2014 | 14 | 14 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | HG002complexvar | homalt | 96.0286 | 96.2968 | 95.7618 | 50.6870 | 12950 | 498 | 12992 | 575 | 251 | 43.6522 | |
| raldana-dualsentieon | INDEL | I6_15 | map_siren | het | 96.0289 | 93.0070 | 99.2537 | 81.6689 | 133 | 10 | 133 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_siren | het | 96.0289 | 93.0070 | 99.2537 | 85.3392 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0289 | 93.6620 | 98.5185 | 45.3441 | 133 | 9 | 133 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | het | 96.0289 | 93.0070 | 99.2537 | 83.7181 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.0289 | 93.0070 | 99.2537 | 92.6856 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | HG002compoundhet | hetalt | 96.0304 | 92.5536 | 99.7785 | 50.2300 | 23305 | 1875 | 23427 | 52 | 52 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m1_e0 | * | 96.0315 | 94.1860 | 97.9508 | 80.5112 | 243 | 15 | 239 | 5 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0317 | 96.0317 | 96.0317 | 92.9688 | 121 | 5 | 121 | 5 | 1 | 20.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | * | 96.0323 | 97.6744 | 94.4444 | 91.6589 | 84 | 2 | 85 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 96.0352 | 95.6140 | 96.4602 | 96.4001 | 109 | 5 | 109 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 96.0352 | 93.9655 | 98.1982 | 88.6735 | 109 | 7 | 109 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 96.0352 | 93.9655 | 98.1982 | 88.9442 | 109 | 7 | 109 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.0352 | 98.6256 | 93.5774 | 85.8273 | 1794 | 25 | 1559 | 107 | 85 | 79.4393 | |