PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60451-60500 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.8140 | 91.9643 | 100.0000 | 71.9346 | 103 | 9 | 103 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | HG002complexvar | het | 95.8142 | 92.5641 | 99.3009 | 57.1386 | 2888 | 232 | 2841 | 20 | 16 | 80.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | * | homalt | 95.8146 | 92.1560 | 99.7758 | 57.5165 | 55688 | 4740 | 55641 | 125 | 99 | 79.2000 | |
| bgallagher-sentieon | INDEL | D1_5 | HG002compoundhet | * | 95.8155 | 94.7855 | 96.8682 | 66.0428 | 11597 | 638 | 11599 | 375 | 373 | 99.4667 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.8162 | 92.9554 | 98.8588 | 48.8601 | 2771 | 210 | 2772 | 32 | 27 | 84.3750 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8166 | 94.3609 | 97.3180 | 80.3612 | 251 | 15 | 254 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.8170 | 92.7219 | 99.1258 | 58.3884 | 3771 | 296 | 3742 | 33 | 31 | 93.9394 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.8179 | 94.0683 | 97.6337 | 60.8078 | 5947 | 375 | 6973 | 169 | 154 | 91.1243 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.8179 | 94.0683 | 97.6337 | 60.8078 | 5947 | 375 | 6973 | 169 | 154 | 91.1243 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | het | 95.8184 | 97.4766 | 94.2156 | 77.2326 | 7069 | 183 | 7069 | 434 | 174 | 40.0922 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | * | 95.8185 | 94.8064 | 96.8525 | 93.2732 | 1004 | 55 | 1077 | 35 | 29 | 82.8571 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8196 | 92.1495 | 99.7942 | 70.9504 | 493 | 42 | 485 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | het | 95.8207 | 93.7687 | 97.9645 | 83.6078 | 2197 | 146 | 2262 | 47 | 8 | 17.0213 | |
| cchapple-custom | SNP | * | map_l150_m0_e0 | * | 95.8209 | 95.5951 | 96.0478 | 81.9455 | 11502 | 530 | 11495 | 473 | 120 | 25.3700 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 95.8217 | 92.4731 | 99.4220 | 87.0023 | 344 | 28 | 344 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.8217 | 92.4731 | 99.4220 | 70.1209 | 172 | 14 | 172 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | tv | map_l100_m0_e0 | het | 95.8224 | 96.2337 | 95.4146 | 78.9693 | 6950 | 272 | 6950 | 334 | 77 | 23.0539 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | het | 95.8231 | 96.5347 | 95.1220 | 90.2334 | 195 | 7 | 195 | 10 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | * | 95.8234 | 97.8457 | 93.8830 | 93.2629 | 1408 | 31 | 1412 | 92 | 10 | 10.8696 | |
| eyeh-varpipe | INDEL | * | map_l100_m0_e0 | * | 95.8235 | 95.2655 | 96.3881 | 94.1040 | 1489 | 74 | 2295 | 86 | 59 | 68.6047 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.8238 | 92.6407 | 99.2335 | 33.1757 | 1498 | 119 | 1683 | 13 | 13 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.8241 | 96.5164 | 95.1417 | 62.7732 | 471 | 17 | 470 | 24 | 20 | 83.3333 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.8242 | 95.3125 | 96.3415 | 60.8992 | 549 | 27 | 553 | 21 | 19 | 90.4762 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.8251 | 98.5087 | 93.2839 | 75.9171 | 6143 | 93 | 6167 | 444 | 105 | 23.6486 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 95.8267 | 95.6693 | 95.9847 | 87.8457 | 486 | 22 | 502 | 21 | 5 | 23.8095 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.8269 | 92.5398 | 99.3561 | 30.5284 | 4416 | 356 | 4938 | 32 | 31 | 96.8750 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.8285 | 93.5953 | 98.1707 | 81.2678 | 643 | 44 | 644 | 12 | 6 | 50.0000 | |
| ckim-isaac | SNP | tv | HG002complexvar | het | 95.8287 | 92.0463 | 99.9352 | 18.9218 | 138745 | 11989 | 138887 | 90 | 17 | 18.8889 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m1_e0 | het | 95.8290 | 92.1159 | 99.8541 | 75.2192 | 2734 | 234 | 2737 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.8304 | 94.6417 | 97.0494 | 60.1686 | 3038 | 172 | 3026 | 92 | 90 | 97.8261 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | het | 95.8306 | 96.9701 | 94.7174 | 76.6962 | 19523 | 610 | 19526 | 1089 | 509 | 46.7401 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.8307 | 92.4731 | 99.4413 | 69.4539 | 172 | 14 | 178 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 80.7087 | 45 | 2 | 47 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 80.0813 | 45 | 2 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 80.1619 | 45 | 2 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 79.5833 | 45 | 2 | 47 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | * | 95.8319 | 98.4005 | 93.3939 | 90.2135 | 1538 | 25 | 1541 | 109 | 10 | 9.1743 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.8320 | 92.1659 | 99.8018 | 61.7166 | 10647 | 905 | 10577 | 21 | 11 | 52.3810 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.8320 | 92.1659 | 99.8018 | 61.7166 | 10647 | 905 | 10577 | 21 | 11 | 52.3810 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m0_e0 | * | 95.8333 | 95.8333 | 95.8333 | 97.8082 | 23 | 1 | 23 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.8333 | 95.8333 | 95.8333 | 92.5466 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.8333 | 92.0000 | 100.0000 | 65.1515 | 23 | 2 | 23 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 95.8333 | 97.8723 | 93.8776 | 94.8038 | 46 | 1 | 46 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 95.8333 | 100.0000 | 92.0000 | 95.3747 | 46 | 0 | 46 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 95.8333 | 100.0000 | 92.0000 | 95.3532 | 22 | 0 | 23 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 95.8333 | 100.0000 | 92.0000 | 95.4710 | 22 | 0 | 23 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m0_e0 | * | 95.8333 | 95.8333 | 95.8333 | 97.6967 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 95.8333 | 92.0000 | 100.0000 | 66.6667 | 161 | 14 | 163 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | segdup | het | 95.8333 | 95.8333 | 95.8333 | 97.0223 | 23 | 1 | 23 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 95.8333 | 95.8333 | 95.8333 | 72.4138 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |