PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59651-59700 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.3020 | 21 | 2 | 21 | 0 | 0 | ||
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.4545 | 91.3043 | 100.0000 | 90.5405 | 63 | 6 | 63 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.4545 | 91.3043 | 100.0000 | 91.5663 | 63 | 6 | 63 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.5414 | 21 | 2 | 21 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.1501 | 21 | 2 | 21 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.4545 | 95.4545 | 95.4545 | 87.6404 | 21 | 1 | 21 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.4545 | 95.4545 | 95.4545 | 96.8594 | 42 | 2 | 42 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m0_e0 | het | 95.4545 | 97.3913 | 93.5933 | 87.7139 | 336 | 9 | 336 | 23 | 2 | 8.6957 | |
| cchapple-custom | INDEL | I16_PLUS | map_siren | homalt | 95.4545 | 100.0000 | 91.3043 | 92.0690 | 21 | 0 | 21 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.4545 | 100.0000 | 91.3043 | 37.8378 | 21 | 0 | 21 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m1_e0 | het | 95.4545 | 100.0000 | 91.3043 | 89.6163 | 39 | 0 | 42 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.4545 | 91.3043 | 100.0000 | 78.1250 | 21 | 2 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.4545 | 95.4545 | 95.4545 | 84.7222 | 21 | 1 | 21 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 72.8814 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 74.4000 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.3846 | 21 | 2 | 21 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.4553 | 98.6030 | 92.5025 | 84.0183 | 6564 | 93 | 6576 | 533 | 65 | 12.1951 | |
| jmaeng-gatk | INDEL | * | map_l125_m1_e0 | het | 95.4569 | 98.1273 | 92.9279 | 92.1545 | 1310 | 25 | 1314 | 100 | 7 | 7.0000 | |
| cchapple-custom | SNP | * | map_l250_m0_e0 | * | 95.4584 | 94.5667 | 96.3671 | 93.6675 | 2019 | 116 | 2016 | 76 | 21 | 27.6316 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.4586 | 91.4533 | 99.8307 | 34.9752 | 2322 | 217 | 2359 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | het | 95.4593 | 97.4118 | 93.5835 | 85.3129 | 828 | 22 | 773 | 53 | 44 | 83.0189 | |
| jmaeng-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 95.4604 | 91.3394 | 99.9708 | 56.0929 | 10209 | 968 | 10266 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | homalt | 95.4612 | 93.4097 | 97.6048 | 81.5368 | 326 | 23 | 326 | 8 | 1 | 12.5000 | |
| cchapple-custom | SNP | tv | map_l100_m0_e0 | het | 95.4613 | 97.4522 | 93.5501 | 77.1681 | 7038 | 184 | 7049 | 486 | 83 | 17.0782 | |
| ghariani-varprowl | INDEL | D1_5 | HG002complexvar | het | 95.4621 | 98.5649 | 92.5488 | 58.7032 | 20467 | 298 | 20407 | 1643 | 1130 | 68.7766 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | * | 95.4627 | 92.9204 | 98.1481 | 93.7895 | 105 | 8 | 106 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4633 | 93.6556 | 97.3422 | 77.2830 | 620 | 42 | 586 | 16 | 7 | 43.7500 | |
| jpowers-varprowl | INDEL | I1_5 | segdup | homalt | 95.4644 | 93.4461 | 97.5717 | 90.6347 | 442 | 31 | 442 | 11 | 11 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | * | hetalt | 95.4648 | 92.2680 | 98.8909 | 56.0163 | 537 | 45 | 535 | 6 | 6 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 95.4649 | 94.8198 | 96.1187 | 82.0271 | 421 | 23 | 421 | 17 | 14 | 82.3529 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | homalt | 95.4651 | 91.8798 | 99.3415 | 92.6863 | 2263 | 200 | 2263 | 15 | 9 | 60.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.4655 | 91.3500 | 99.9693 | 40.4962 | 3221 | 305 | 3261 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.4655 | 91.3500 | 99.9693 | 40.4962 | 3221 | 305 | 3261 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e1 | * | 95.4657 | 96.1440 | 94.7970 | 88.9775 | 748 | 30 | 747 | 41 | 8 | 19.5122 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | het | 95.4667 | 94.2105 | 96.7568 | 95.6957 | 179 | 11 | 179 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | * | func_cds | * | 95.4669 | 93.9326 | 97.0522 | 79.5644 | 418 | 27 | 428 | 13 | 11 | 84.6154 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.4677 | 94.4444 | 96.5135 | 88.1879 | 629 | 37 | 609 | 22 | 5 | 22.7273 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.4677 | 94.4444 | 96.5135 | 88.1879 | 629 | 37 | 609 | 22 | 5 | 22.7273 | |
| ghariani-varprowl | SNP | tv | map_l150_m0_e0 | * | 95.4679 | 97.6521 | 93.3792 | 85.3184 | 4076 | 98 | 4076 | 289 | 54 | 18.6851 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.4697 | 91.8338 | 99.4055 | 29.1133 | 12640 | 1124 | 12707 | 76 | 75 | 98.6842 | |
| ckim-vqsr | INDEL | I6_15 | HG002complexvar | hetalt | 95.4701 | 91.3328 | 100.0000 | 52.5604 | 1117 | 106 | 1158 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | HG002complexvar | hetalt | 95.4701 | 91.3328 | 100.0000 | 52.5604 | 1117 | 106 | 1158 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.4707 | 92.3849 | 98.7698 | 48.9915 | 1104 | 91 | 1124 | 14 | 13 | 92.8571 | |
| ckim-isaac | SNP | tv | HG002complexvar | * | 95.4727 | 91.5159 | 99.7871 | 19.3101 | 225271 | 20884 | 225437 | 481 | 401 | 83.3680 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 95.4728 | 95.2120 | 95.7351 | 40.3377 | 4872 | 245 | 4871 | 217 | 88 | 40.5530 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.4729 | 99.6276 | 91.6509 | 80.5506 | 2408 | 9 | 2415 | 220 | 130 | 59.0909 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4733 | 93.5484 | 97.4790 | 90.8672 | 116 | 8 | 116 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e0 | homalt | 95.4735 | 91.6524 | 99.6271 | 92.3917 | 1603 | 146 | 1603 | 6 | 5 | 83.3333 | |