PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59051-59100 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m1_e0 | * | 95.2145 | 95.8159 | 94.6207 | 88.3889 | 687 | 30 | 686 | 39 | 8 | 20.5128 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e0 | het | 95.2161 | 95.7746 | 94.6640 | 86.7331 | 476 | 21 | 479 | 27 | 3 | 11.1111 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.2177 | 93.7500 | 96.7320 | 83.6118 | 2220 | 148 | 2220 | 75 | 48 | 64.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 95.2178 | 98.1855 | 92.4242 | 92.0494 | 487 | 9 | 488 | 40 | 3 | 7.5000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.2178 | 95.1859 | 95.2497 | 71.1485 | 31636 | 1600 | 37135 | 1852 | 568 | 30.6695 | |
| gduggal-bwavard | SNP | * | map_l100_m1_e0 | het | 95.2191 | 97.5462 | 93.0004 | 78.0483 | 44246 | 1113 | 43686 | 3288 | 213 | 6.4781 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2200 | 98.0630 | 92.5373 | 51.0491 | 2430 | 48 | 2418 | 195 | 3 | 1.5385 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.2206 | 92.5954 | 97.9989 | 55.8475 | 3689 | 295 | 3722 | 76 | 35 | 46.0526 | |
| ndellapenna-hhga | INDEL | I6_15 | * | hetalt | 95.2209 | 91.6969 | 99.0267 | 38.6839 | 7841 | 710 | 7834 | 77 | 70 | 90.9091 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.2210 | 94.2188 | 96.2448 | 59.6025 | 2575 | 158 | 2563 | 100 | 97 | 97.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.2221 | 93.4610 | 97.0508 | 84.9985 | 1415 | 99 | 1415 | 43 | 17 | 39.5349 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | homalt | 95.2221 | 92.9624 | 97.5945 | 78.4125 | 568 | 43 | 568 | 14 | 2 | 14.2857 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 95.2221 | 98.5390 | 92.1212 | 86.6783 | 1821 | 27 | 1824 | 156 | 11 | 7.0513 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.2234 | 91.3356 | 99.4570 | 29.5056 | 2161 | 205 | 2198 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 95.2238 | 96.6140 | 93.8731 | 40.3394 | 428 | 15 | 429 | 28 | 27 | 96.4286 | |
| cchapple-custom | INDEL | * | map_l100_m0_e0 | * | 95.2252 | 96.0972 | 94.3688 | 85.7659 | 1502 | 61 | 1525 | 91 | 22 | 24.1758 | |
| gduggal-snapfb | INDEL | * | segdup | homalt | 95.2260 | 93.4375 | 97.0842 | 94.2949 | 897 | 63 | 899 | 27 | 15 | 55.5556 | |
| jpowers-varprowl | INDEL | * | map_l100_m2_e1 | homalt | 95.2265 | 91.8813 | 98.8245 | 79.7621 | 1177 | 104 | 1177 | 14 | 9 | 64.2857 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2267 | 95.0000 | 95.4545 | 93.3333 | 19 | 1 | 21 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | het | 95.2267 | 97.7873 | 92.7967 | 92.2619 | 3182 | 72 | 3182 | 247 | 49 | 19.8381 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.2271 | 91.4028 | 99.3853 | 26.0145 | 6294 | 592 | 6306 | 39 | 35 | 89.7436 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | het | 95.2276 | 96.5517 | 93.9394 | 90.5714 | 28 | 1 | 31 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | HG002compoundhet | het | 95.2281 | 95.0617 | 95.3950 | 30.7967 | 385 | 20 | 2403 | 116 | 113 | 97.4138 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2283 | 99.5561 | 91.2611 | 45.6295 | 2467 | 11 | 2475 | 237 | 8 | 3.3755 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.2285 | 93.2851 | 97.2547 | 53.8987 | 903 | 65 | 3082 | 87 | 61 | 70.1149 | |
| cchapple-custom | SNP | tv | map_l150_m2_e1 | het | 95.2289 | 97.2237 | 93.3142 | 82.3755 | 7144 | 204 | 7160 | 513 | 83 | 16.1793 | |
| cchapple-custom | INDEL | * | map_l100_m2_e1 | het | 95.2316 | 96.5856 | 93.9150 | 85.7416 | 2263 | 80 | 2454 | 159 | 41 | 25.7862 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e1 | het | 95.2326 | 91.4826 | 99.3031 | 83.5057 | 290 | 27 | 285 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | map_l250_m1_e0 | * | 95.2339 | 94.6932 | 95.7809 | 91.0914 | 4336 | 243 | 4336 | 191 | 57 | 29.8429 | |
| asubramanian-gatk | INDEL | I1_5 | HG002compoundhet | * | 95.2373 | 93.5902 | 96.9436 | 67.0365 | 11564 | 792 | 11577 | 365 | 350 | 95.8904 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 95.2376 | 97.3829 | 93.1848 | 85.5574 | 707 | 19 | 711 | 52 | 4 | 7.6923 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m0_e0 | het | 95.2381 | 100.0000 | 90.9091 | 94.0860 | 8 | 0 | 10 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2381 | 100.0000 | 90.9091 | 94.3005 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | segdup | homalt | 95.2381 | 100.0000 | 90.9091 | 93.2927 | 50 | 0 | 50 | 5 | 5 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.1321 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.6087 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.1933 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.2381 | 95.2381 | 95.2381 | 89.9522 | 40 | 2 | 40 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | decoy | * | 95.2381 | 100.0000 | 90.9091 | 99.9688 | 10 | 0 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.5556 | 10 | 1 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m0_e0 | het | 95.2381 | 96.7742 | 93.7500 | 93.2991 | 330 | 11 | 330 | 22 | 1 | 4.5455 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.1463 | 10 | 1 | 13 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 80.0000 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.6514 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.3009 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.1169 | 10 | 1 | 13 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.3526 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.7620 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 95.2381 | 100.0000 | 90.9091 | 97.8109 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | segdup | het | 95.2381 | 97.8261 | 92.7835 | 96.4154 | 90 | 2 | 90 | 7 | 0 | 0.0000 | |