PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57551-57600 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D16_PLUS | * | * | 94.4399 | 93.5879 | 95.3076 | 64.2354 | 6349 | 435 | 6337 | 312 | 290 | 92.9487 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4403 | 91.3876 | 97.7041 | 63.8876 | 764 | 72 | 766 | 18 | 15 | 83.3333 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.4444 | 89.4737 | 100.0000 | 70.4225 | 17 | 2 | 21 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 96.0177 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 93.1034 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 94.1176 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 94.1558 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.4444 | 100.0000 | 89.4737 | 99.2945 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 92.0000 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 93.2331 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 93.2836 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 85.3448 | 17 | 2 | 17 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 87.3134 | 17 | 2 | 17 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 93.7282 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 94.6746 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 94.7059 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.4444 | 89.4737 | 100.0000 | 72.3684 | 17 | 2 | 21 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.4444 | 91.8919 | 97.1429 | 87.8472 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.4444 | 91.8919 | 97.1429 | 63.9175 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.4444 | 91.8919 | 97.1429 | 58.3333 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 83.1683 | 17 | 2 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 76.7123 | 17 | 2 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 79.2683 | 17 | 2 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 93.1034 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m1_e0 | * | 94.4444 | 94.4444 | 94.4444 | 96.3190 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.4444 | 100.0000 | 89.4737 | 99.3012 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.2756 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | tech_badpromoters | * | 94.4444 | 89.4737 | 100.0000 | 32.0000 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | segdup | homalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 92.8571 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 94.4444 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.2756 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 95.2880 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | map_siren | hetalt | 94.4444 | 89.4737 | 100.0000 | 86.4930 | 221 | 26 | 223 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.4444 | 100.0000 | 89.4737 | 97.8604 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 94.4444 | 100.0000 | 89.4737 | 95.6221 | 14 | 0 | 17 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 94.4444 | 100.0000 | 89.4737 | 95.7207 | 14 | 0 | 17 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 94.4444 | 95.7746 | 93.1507 | 94.4190 | 68 | 3 | 68 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 94.4444 | 95.7746 | 93.1507 | 94.5482 | 68 | 3 | 68 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.2756 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 79.7619 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 82.2917 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 84.5455 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.4444 | 94.4444 | 94.4444 | 89.0578 | 34 | 2 | 34 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_siren | hetalt | 94.4444 | 89.4737 | 100.0000 | 86.4930 | 221 | 26 | 223 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 83.6364 | 17 | 2 | 18 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 86.1789 | 17 | 2 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 87.6812 | 17 | 2 | 17 | 0 | 0 | ||